Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2390

Experiment: Defined MoLS4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2389 and DvMF_2390 are separated by 117 nucleotidesDvMF_2390 and DvMF_2391 are separated by 43 nucleotidesDvMF_2391 and DvMF_2392 are separated by 138 nucleotides DvMF_2389: DvMF_2389 - FAD-dependent pyridine nucleotide-disulphide oxidoreductase (RefSeq), at 3,019,951 to 3,022,284 _2389 DvMF_2390: DvMF_2390 - arsenite-activated ATPase ArsA (RefSeq), at 3,022,402 to 3,024,141 _2390 DvMF_2391: DvMF_2391 - Arsenical resistance operon trans-acting repressor ArsD (RefSeq), at 3,024,185 to 3,024,508 _2391 DvMF_2392: DvMF_2392 - transcriptional regulator, ArsR family (RefSeq), at 3,024,647 to 3,025,000 _2392 Position (kb) 3022 3023 3024 3025Strain fitness (log2 ratio) -1 0 1 2at 3021.408 kb on - strand, within DvMF_2389at 3021.605 kb on + strand, within DvMF_2389at 3021.727 kb on + strand, within DvMF_2389at 3021.730 kb on - strand, within DvMF_2389at 3021.868 kb on - strand, within DvMF_2389at 3022.527 kb on + strandat 3022.527 kb on + strandat 3022.527 kb on + strandat 3022.535 kb on - strandat 3022.535 kb on - strandat 3022.600 kb on + strand, within DvMF_2390at 3022.856 kb on + strand, within DvMF_2390at 3022.958 kb on + strand, within DvMF_2390at 3023.145 kb on - strand, within DvMF_2390at 3023.149 kb on + strand, within DvMF_2390at 3023.388 kb on - strand, within DvMF_2390at 3023.491 kb on - strand, within DvMF_2390at 3023.552 kb on - strand, within DvMF_2390at 3023.647 kb on + strand, within DvMF_2390at 3023.709 kb on - strand, within DvMF_2390at 3024.147 kb on - strandat 3024.366 kb on + strand, within DvMF_2391at 3024.366 kb on + strand, within DvMF_2391at 3024.374 kb on - strand, within DvMF_2391at 3024.622 kb on + strandat 3024.915 kb on - strand, within DvMF_2392at 3024.954 kb on + strand, within DvMF_2392at 3025.059 kb on + strandat 3025.067 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Defined MoLS4
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3,021,408 - DvMF_2389 0.62 -0.5
3,021,605 + DvMF_2389 0.71 -0.4
3,021,727 + DvMF_2389 0.76 -0.3
3,021,730 - DvMF_2389 0.76 -0.3
3,021,868 - DvMF_2389 0.82 -0.8
3,022,527 + +0.0
3,022,527 + -0.3
3,022,527 + -0.4
3,022,535 - +0.0
3,022,535 - +0.6
3,022,600 + DvMF_2390 0.11 -0.9
3,022,856 + DvMF_2390 0.26 -0.6
3,022,958 + DvMF_2390 0.32 -0.7
3,023,145 - DvMF_2390 0.43 +1.8
3,023,149 + DvMF_2390 0.43 -0.2
3,023,388 - DvMF_2390 0.57 -0.6
3,023,491 - DvMF_2390 0.63 -0.9
3,023,552 - DvMF_2390 0.66 +0.0
3,023,647 + DvMF_2390 0.72 -0.2
3,023,709 - DvMF_2390 0.75 -0.4
3,024,147 - -0.5
3,024,366 + DvMF_2391 0.56 -0.6
3,024,366 + DvMF_2391 0.56 +0.2
3,024,374 - DvMF_2391 0.58 -0.3
3,024,622 + -0.3
3,024,915 - DvMF_2392 0.76 -1.0
3,024,954 + DvMF_2392 0.87 +0.3
3,025,059 + -0.5
3,025,067 - -0.5

Or see this region's nucleotide sequence