Experiment: Defined MoLS4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_2250 and DvMF_2251 are separated by 314 nucleotides DvMF_2251 and DvMF_2252 overlap by 4 nucleotides
DvMF_2250: DvMF_2250 - membrane protein involved in aromatic hydrocarbon degradation (RefSeq), at 2,826,744 to 2,827,967
_2250
DvMF_2251: DvMF_2251 - hypothetical protein (RefSeq), at 2,828,282 to 2,828,776
_2251
DvMF_2252: DvMF_2252 - DEAD/DEAH box helicase domain protein (RefSeq), at 2,828,773 to 2,831,745
_2252
Position (kb)
2828
2829 Strain fitness (log2 ratio)
-1
0
1 at 2827.445 kb on - strand, within DvMF_2250 at 2827.554 kb on + strand, within DvMF_2250 at 2827.688 kb on - strand, within DvMF_2250 at 2827.745 kb on - strand, within DvMF_2250 at 2827.785 kb on + strand, within DvMF_2250 at 2827.801 kb on + strand, within DvMF_2250 at 2827.809 kb on - strand, within DvMF_2250 at 2828.090 kb on - strand at 2828.415 kb on + strand, within DvMF_2251 at 2828.575 kb on - strand, within DvMF_2251 at 2828.597 kb on - strand, within DvMF_2251 at 2828.764 kb on + strand at 2829.038 kb on - strand at 2829.103 kb on - strand, within DvMF_2252 at 2829.220 kb on + strand, within DvMF_2252 at 2829.313 kb on - strand, within DvMF_2252 at 2829.430 kb on + strand, within DvMF_2252 at 2829.491 kb on + strand, within DvMF_2252 at 2829.536 kb on + strand, within DvMF_2252 at 2829.585 kb on + strand, within DvMF_2252 at 2829.754 kb on - strand, within DvMF_2252
Per-strain Table
Position Strand Gene LocusTag Fraction Defined MoLS4 remove 2,827,445 - DvMF_2250 0.57 -0.6 2,827,554 + DvMF_2250 0.66 +0.0 2,827,688 - DvMF_2250 0.77 -0.1 2,827,745 - DvMF_2250 0.82 -0.6 2,827,785 + DvMF_2250 0.85 -0.6 2,827,801 + DvMF_2250 0.86 -0.3 2,827,809 - DvMF_2250 0.87 +0.3 2,828,090 - -0.8 2,828,415 + DvMF_2251 0.27 -0.2 2,828,575 - DvMF_2251 0.59 -0.2 2,828,597 - DvMF_2251 0.64 +0.2 2,828,764 + -1.0 2,829,038 - -0.7 2,829,103 - DvMF_2252 0.11 -1.6 2,829,220 + DvMF_2252 0.15 -0.6 2,829,313 - DvMF_2252 0.18 -0.9 2,829,430 + DvMF_2252 0.22 -0.3 2,829,491 + DvMF_2252 0.24 -0.7 2,829,536 + DvMF_2252 0.26 -0.5 2,829,585 + DvMF_2252 0.27 -0.2 2,829,754 - DvMF_2252 0.33 -0.9
Or see this region's nucleotide sequence