Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2249

Experiment: Defined MoLS4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2248 and DvMF_2249 are separated by 402 nucleotidesDvMF_2249 and DvMF_2250 are separated by 384 nucleotides DvMF_2248: DvMF_2248 - signal recognition particle-docking protein FtsY (RefSeq), at 2,822,247 to 2,823,641 _2248 DvMF_2249: DvMF_2249 - signal transduction histidine kinase, nitrogen specific, NtrB (RefSeq), at 2,824,044 to 2,826,359 _2249 DvMF_2250: DvMF_2250 - membrane protein involved in aromatic hydrocarbon degradation (RefSeq), at 2,826,744 to 2,827,967 _2250 Position (kb) 2824 2825 2826 2827Strain fitness (log2 ratio) -1 0 1at 2824.047 kb on + strandat 2824.288 kb on + strand, within DvMF_2249at 2824.361 kb on - strand, within DvMF_2249at 2824.365 kb on + strand, within DvMF_2249at 2824.366 kb on - strand, within DvMF_2249at 2824.462 kb on - strand, within DvMF_2249at 2824.985 kb on + strand, within DvMF_2249at 2825.269 kb on + strand, within DvMF_2249at 2825.428 kb on - strand, within DvMF_2249at 2825.545 kb on - strand, within DvMF_2249at 2825.680 kb on - strand, within DvMF_2249at 2826.225 kb on + strandat 2826.362 kb on - strandat 2826.490 kb on + strandat 2826.516 kb on + strandat 2826.528 kb on + strandat 2826.604 kb on + strandat 2826.839 kb on + strandat 2827.047 kb on - strand, within DvMF_2250at 2827.047 kb on - strand, within DvMF_2250at 2827.072 kb on - strand, within DvMF_2250at 2827.174 kb on + strand, within DvMF_2250

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Per-strain Table

Position Strand Gene LocusTag Fraction Defined MoLS4
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2,824,047 + +0.7
2,824,288 + DvMF_2249 0.11 +0.4
2,824,361 - DvMF_2249 0.14 +0.5
2,824,365 + DvMF_2249 0.14 +1.2
2,824,366 - DvMF_2249 0.14 +0.9
2,824,462 - DvMF_2249 0.18 +0.6
2,824,985 + DvMF_2249 0.41 +0.7
2,825,269 + DvMF_2249 0.53 -0.0
2,825,428 - DvMF_2249 0.60 +0.8
2,825,545 - DvMF_2249 0.65 +0.8
2,825,680 - DvMF_2249 0.71 +0.0
2,826,225 + +0.9
2,826,362 - -1.4
2,826,490 + -0.1
2,826,516 + -0.2
2,826,528 + -0.6
2,826,604 + -0.5
2,826,839 + -0.6
2,827,047 - DvMF_2250 0.25 +0.4
2,827,047 - DvMF_2250 0.25 -0.5
2,827,072 - DvMF_2250 0.27 -0.6
2,827,174 + DvMF_2250 0.35 -0.2

Or see this region's nucleotide sequence