Experiment: Defined MoLS4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1967 and DvMF_1968 are separated by 56 nucleotides DvMF_1968 and DvMF_1969 are separated by 219 nucleotides DvMF_1969 and DvMF_1970 are separated by 474 nucleotides
DvMF_1967: DvMF_1967 - UvrD/REP helicase (RefSeq), at 2,430,284 to 2,432,653
_1967
DvMF_1968: DvMF_1968 - type I phosphodiesterase/nucleotide pyrophosphatase (RefSeq), at 2,432,710 to 2,434,473
_1968
DvMF_1969: DvMF_1969 - 4-oxalocrotonate tautomerase family enzyme (RefSeq), at 2,434,693 to 2,434,896
_1969
DvMF_1970: DvMF_1970 - hypothetical protein (RefSeq), at 2,435,371 to 2,435,865
_1970
Position (kb)
2432
2433
2434
2435 Strain fitness (log2 ratio)
-1
0
1 at 2431.725 kb on + strand, within DvMF_1967 at 2432.078 kb on + strand, within DvMF_1967 at 2432.381 kb on + strand, within DvMF_1967 at 2432.742 kb on - strand at 2432.802 kb on - strand at 2432.925 kb on + strand, within DvMF_1968 at 2433.014 kb on - strand, within DvMF_1968 at 2433.030 kb on + strand, within DvMF_1968 at 2433.042 kb on - strand, within DvMF_1968 at 2433.130 kb on + strand, within DvMF_1968 at 2433.202 kb on - strand, within DvMF_1968 at 2433.212 kb on - strand, within DvMF_1968 at 2433.289 kb on + strand, within DvMF_1968 at 2433.556 kb on + strand, within DvMF_1968 at 2433.657 kb on - strand, within DvMF_1968 at 2433.737 kb on + strand, within DvMF_1968 at 2433.756 kb on - strand at 2433.756 kb on - strand, within DvMF_1968 at 2433.924 kb on - strand, within DvMF_1968 at 2433.937 kb on + strand, within DvMF_1968 at 2433.983 kb on - strand, within DvMF_1968 at 2433.983 kb on - strand, within DvMF_1968 at 2434.243 kb on - strand, within DvMF_1968 at 2434.260 kb on - strand, within DvMF_1968 at 2434.374 kb on + strand at 2434.374 kb on + strand at 2434.390 kb on - strand at 2434.482 kb on - strand at 2434.745 kb on - strand, within DvMF_1969 at 2435.138 kb on + strand at 2435.143 kb on + strand at 2435.143 kb on + strand at 2435.176 kb on + strand at 2435.176 kb on + strand at 2435.184 kb on - strand at 2435.184 kb on - strand at 2435.212 kb on - strand at 2435.245 kb on - strand at 2435.330 kb on + strand at 2435.330 kb on + strand at 2435.414 kb on + strand at 2435.427 kb on - strand, within DvMF_1970 at 2435.460 kb on + strand, within DvMF_1970 at 2435.463 kb on - strand, within DvMF_1970
Per-strain Table
Position Strand Gene LocusTag Fraction Defined MoLS4 remove 2,431,725 + DvMF_1967 0.61 -0.7 2,432,078 + DvMF_1967 0.76 +0.4 2,432,381 + DvMF_1967 0.88 -1.2 2,432,742 - -0.2 2,432,802 - -0.3 2,432,925 + DvMF_1968 0.12 -0.2 2,433,014 - DvMF_1968 0.17 +0.1 2,433,030 + DvMF_1968 0.18 +0.2 2,433,042 - DvMF_1968 0.19 +0.0 2,433,130 + DvMF_1968 0.24 +0.2 2,433,202 - DvMF_1968 0.28 -0.3 2,433,212 - DvMF_1968 0.28 -0.2 2,433,289 + DvMF_1968 0.33 -0.3 2,433,556 + DvMF_1968 0.48 -0.1 2,433,657 - DvMF_1968 0.54 -0.6 2,433,737 + DvMF_1968 0.58 -0.1 2,433,756 - +0.9 2,433,756 - DvMF_1968 0.59 -0.1 2,433,924 - DvMF_1968 0.69 -0.1 2,433,937 + DvMF_1968 0.70 -1.0 2,433,983 - DvMF_1968 0.72 +0.0 2,433,983 - DvMF_1968 0.72 -0.2 2,434,243 - DvMF_1968 0.87 -0.6 2,434,260 - DvMF_1968 0.88 -0.0 2,434,374 + -0.3 2,434,374 + -0.1 2,434,390 - -0.1 2,434,482 - -0.4 2,434,745 - DvMF_1969 0.25 -0.0 2,435,138 + -0.6 2,435,143 + -0.3 2,435,143 + -0.2 2,435,176 + -0.3 2,435,176 + -0.4 2,435,184 - -0.1 2,435,184 - +0.1 2,435,212 - -0.5 2,435,245 - -0.9 2,435,330 + -0.0 2,435,330 + -0.9 2,435,414 + -0.4 2,435,427 - DvMF_1970 0.11 -0.6 2,435,460 + DvMF_1970 0.18 -0.2 2,435,463 - DvMF_1970 0.19 -0.6
Or see this region's nucleotide sequence