Experiment: Defined MoLS4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1398 and DvMF_1399 are separated by 487 nucleotides DvMF_1399 and DvMF_1400 are separated by 120 nucleotides DvMF_1400 and DvMF_1401 overlap by 65 nucleotides
DvMF_1398: DvMF_1398 - ATP-dependent reduction of co(II)balamin (RamA-like) (from data) , at 1,704,829 to 1,706,886
_1398
DvMF_1399: DvMF_1399 - Ribosomal small subunit Rsm22 (RefSeq), at 1,707,374 to 1,710,295
_1399
DvMF_1400: DvMF_1400 - lipoate-protein ligase B (RefSeq), at 1,710,416 to 1,711,072
_1400
DvMF_1401: DvMF_1401 - lipoyl synthase (RefSeq), at 1,711,008 to 1,711,910
_1401
Position (kb)
1707
1708
1709
1710
1711 Strain fitness (log2 ratio)
-1
0
1 at 1706.380 kb on - strand, within DvMF_1398 at 1706.801 kb on - strand at 1706.986 kb on + strand at 1707.392 kb on + strand at 1707.447 kb on + strand at 1707.457 kb on + strand at 1707.596 kb on + strand at 1707.740 kb on - strand, within DvMF_1399 at 1707.913 kb on - strand, within DvMF_1399 at 1708.096 kb on - strand, within DvMF_1399 at 1708.141 kb on + strand, within DvMF_1399 at 1708.306 kb on + strand, within DvMF_1399 at 1708.433 kb on + strand, within DvMF_1399 at 1708.553 kb on - strand, within DvMF_1399 at 1708.926 kb on + strand, within DvMF_1399 at 1708.944 kb on + strand, within DvMF_1399 at 1709.077 kb on - strand, within DvMF_1399 at 1709.109 kb on + strand, within DvMF_1399 at 1709.193 kb on - strand, within DvMF_1399 at 1709.990 kb on + strand, within DvMF_1399 at 1710.156 kb on + strand at 1710.156 kb on + strand at 1710.174 kb on - strand at 1710.423 kb on + strand at 1710.740 kb on - strand, within DvMF_1400 at 1710.762 kb on + strand, within DvMF_1400 at 1710.842 kb on + strand, within DvMF_1400 at 1711.115 kb on + strand, within DvMF_1401
Per-strain Table
Position Strand Gene LocusTag Fraction Defined MoLS4 remove 1,706,380 - DvMF_1398 0.75 -1.5 1,706,801 - -1.1 1,706,986 + -0.9 1,707,392 + +0.5 1,707,447 + +0.5 1,707,457 + +0.6 1,707,596 + +0.3 1,707,740 - DvMF_1399 0.13 +0.7 1,707,913 - DvMF_1399 0.18 +0.8 1,708,096 - DvMF_1399 0.25 +0.0 1,708,141 + DvMF_1399 0.26 +0.5 1,708,306 + DvMF_1399 0.32 +0.2 1,708,433 + DvMF_1399 0.36 +0.5 1,708,553 - DvMF_1399 0.40 +0.5 1,708,926 + DvMF_1399 0.53 +0.3 1,708,944 + DvMF_1399 0.54 +1.3 1,709,077 - DvMF_1399 0.58 +0.4 1,709,109 + DvMF_1399 0.59 +0.6 1,709,193 - DvMF_1399 0.62 +0.5 1,709,990 + DvMF_1399 0.90 +0.0 1,710,156 + +0.1 1,710,156 + -0.1 1,710,174 - +0.2 1,710,423 + -0.9 1,710,740 - DvMF_1400 0.49 -0.5 1,710,762 + DvMF_1400 0.53 -0.4 1,710,842 + DvMF_1400 0.65 -0.8 1,711,115 + DvMF_1401 0.12 -0.5
Or see this region's nucleotide sequence