Experiment: Defined MoLS4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1221 and DvMF_1222 overlap by 4 nucleotides DvMF_1222 and DvMF_1223 overlap by 20 nucleotides
DvMF_1221: DvMF_1221 - Extracellular ligand-binding receptor (RefSeq), at 1,504,235 to 1,505,653
_1221
DvMF_1222: DvMF_1222 - multi-sensor signal transduction histidine kinase (RefSeq), at 1,505,650 to 1,507,710
_1222
DvMF_1223: DvMF_1223 - anti-sigma-factor antagonist (RefSeq), at 1,507,691 to 1,508,506
_1223
Position (kb)
1505
1506
1507
1508 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1504.793 kb on + strand, within DvMF_1221 at 1504.952 kb on - strand, within DvMF_1221 at 1504.977 kb on - strand, within DvMF_1221 at 1505.095 kb on - strand, within DvMF_1221 at 1505.097 kb on - strand, within DvMF_1221 at 1505.322 kb on - strand, within DvMF_1221 at 1505.440 kb on - strand, within DvMF_1221 at 1505.845 kb on - strand at 1505.959 kb on + strand, within DvMF_1222 at 1506.037 kb on + strand, within DvMF_1222 at 1506.094 kb on + strand, within DvMF_1222 at 1506.237 kb on + strand, within DvMF_1222 at 1506.245 kb on - strand, within DvMF_1222 at 1506.438 kb on + strand, within DvMF_1222 at 1506.443 kb on - strand, within DvMF_1222 at 1506.525 kb on - strand, within DvMF_1222 at 1506.570 kb on - strand, within DvMF_1222 at 1506.598 kb on - strand, within DvMF_1222 at 1506.680 kb on - strand, within DvMF_1222 at 1506.682 kb on + strand, within DvMF_1222 at 1506.803 kb on - strand, within DvMF_1222 at 1506.881 kb on + strand, within DvMF_1222 at 1506.918 kb on + strand, within DvMF_1222 at 1507.357 kb on + strand, within DvMF_1222 at 1507.365 kb on - strand, within DvMF_1222 at 1507.365 kb on - strand, within DvMF_1222 at 1507.365 kb on - strand, within DvMF_1222 at 1507.365 kb on - strand, within DvMF_1222 at 1507.365 kb on - strand, within DvMF_1222 at 1507.365 kb on - strand, within DvMF_1222 at 1507.394 kb on + strand, within DvMF_1222 at 1507.529 kb on - strand at 1507.541 kb on + strand at 1507.541 kb on + strand at 1507.549 kb on - strand at 1507.727 kb on - strand at 1507.733 kb on - strand at 1507.928 kb on + strand, within DvMF_1223 at 1508.056 kb on - strand, within DvMF_1223 at 1508.240 kb on + strand, within DvMF_1223 at 1508.408 kb on - strand, within DvMF_1223 at 1508.558 kb on + strand at 1508.561 kb on - strand at 1508.593 kb on + strand at 1508.593 kb on + strand at 1508.624 kb on - strand at 1508.676 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Defined MoLS4 remove 1,504,793 + DvMF_1221 0.39 -1.2 1,504,952 - DvMF_1221 0.51 -0.7 1,504,977 - DvMF_1221 0.52 -1.8 1,505,095 - DvMF_1221 0.61 -1.4 1,505,097 - DvMF_1221 0.61 -0.8 1,505,322 - DvMF_1221 0.77 -0.0 1,505,440 - DvMF_1221 0.85 +0.4 1,505,845 - -0.4 1,505,959 + DvMF_1222 0.15 -0.9 1,506,037 + DvMF_1222 0.19 -0.9 1,506,094 + DvMF_1222 0.22 -1.2 1,506,237 + DvMF_1222 0.28 -0.9 1,506,245 - DvMF_1222 0.29 -0.6 1,506,438 + DvMF_1222 0.38 -1.0 1,506,443 - DvMF_1222 0.38 -0.2 1,506,525 - DvMF_1222 0.42 -1.1 1,506,570 - DvMF_1222 0.45 -0.5 1,506,598 - DvMF_1222 0.46 -0.5 1,506,680 - DvMF_1222 0.50 -1.1 1,506,682 + DvMF_1222 0.50 -0.8 1,506,803 - DvMF_1222 0.56 -0.9 1,506,881 + DvMF_1222 0.60 -0.1 1,506,918 + DvMF_1222 0.62 -2.2 1,507,357 + DvMF_1222 0.83 -0.2 1,507,365 - DvMF_1222 0.83 -0.8 1,507,365 - DvMF_1222 0.83 -0.4 1,507,365 - DvMF_1222 0.83 -0.3 1,507,365 - DvMF_1222 0.83 -0.9 1,507,365 - DvMF_1222 0.83 -1.3 1,507,365 - DvMF_1222 0.83 -0.8 1,507,394 + DvMF_1222 0.85 -0.9 1,507,529 - -0.6 1,507,541 + -0.4 1,507,541 + +0.1 1,507,549 - -0.8 1,507,727 - -1.1 1,507,733 - +0.5 1,507,928 + DvMF_1223 0.29 -2.8 1,508,056 - DvMF_1223 0.45 -0.7 1,508,240 + DvMF_1223 0.67 -1.2 1,508,408 - DvMF_1223 0.88 -1.5 1,508,558 + -0.8 1,508,561 - -1.3 1,508,593 + -0.4 1,508,593 + -1.6 1,508,624 - +1.4 1,508,676 + -0.1
Or see this region's nucleotide sequence