Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1143

Experiment: Defined MoLS4

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDvMF_1142 and DvMF_1143 are separated by 607 nucleotidesDvMF_1143 and DvMF_1144 are separated by 124 nucleotidesDvMF_1144 and DvMF_1145 overlap by 4 nucleotides DvMF_1142: DvMF_1142 - SNARE associated Golgi protein (RefSeq), at 1,401,995 to 1,402,645 _1142 DvMF_1143: DvMF_1143 - flavodoxin (RefSeq), at 1,403,253 to 1,403,699 _1143 DvMF_1144: DvMF_1144 - hypothetical protein (RefSeq), at 1,403,824 to 1,404,039 _1144 DvMF_1145: DvMF_1145 - hypothetical protein (RefSeq), at 1,404,036 to 1,404,221 _1145 Position (kb) 1403 1404Strain fitness (log2 ratio) -1 0 1at 1402.418 kb on + strand, within DvMF_1142at 1402.553 kb on - strand, within DvMF_1142at 1403.026 kb on + strandat 1403.214 kb on - strandat 1403.329 kb on + strand, within DvMF_1143at 1403.412 kb on - strand, within DvMF_1143at 1403.702 kb on - strandat 1403.783 kb on + strandat 1403.815 kb on - strandat 1403.829 kb on - strandat 1403.835 kb on - strandat 1403.948 kb on + strand, within DvMF_1144at 1403.948 kb on + strand, within DvMF_1144at 1403.976 kb on + strand, within DvMF_1144at 1404.095 kb on + strand, within DvMF_1145at 1404.555 kb on + strandat 1404.563 kb on - strandat 1404.676 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Defined MoLS4
remove
1,402,418 + DvMF_1142 0.65 +0.9
1,402,553 - DvMF_1142 0.86 +0.1
1,403,026 + -1.0
1,403,214 - -1.2
1,403,329 + DvMF_1143 0.17 -1.1
1,403,412 - DvMF_1143 0.36 -1.7
1,403,702 - -0.4
1,403,783 + +0.3
1,403,815 - +0.0
1,403,829 - -0.6
1,403,835 - -0.5
1,403,948 + DvMF_1144 0.57 -0.5
1,403,948 + DvMF_1144 0.57 -0.2
1,403,976 + DvMF_1144 0.70 -0.4
1,404,095 + DvMF_1145 0.32 -0.4
1,404,555 + -0.1
1,404,563 - -0.4
1,404,676 + +0.7

Or see this region's nucleotide sequence