Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1050

Experiment: Defined MoLS4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1049 and DvMF_1050 are separated by 323 nucleotidesDvMF_1050 and DvMF_R0030 are separated by 515 nucleotidesDvMF_R0030 and DvMF_R0031 are separated by 105 nucleotides DvMF_1049: DvMF_1049 - major facilitator superfamily MFS_1 (RefSeq), at 1,275,173 to 1,276,438 _1049 DvMF_1050: DvMF_1050 - Inositol-phosphate phosphatase (RefSeq), at 1,276,762 to 1,277,601 _1050 DvMF_R0030: DvMF_R0030 - 5S ribosomal RNA (RefSeq), at 1,278,117 to 1,278,231 _R0030 DvMF_R0031: DvMF_R0031 - 23S ribosomal RNA (RefSeq), at 1,278,337 to 1,281,262 _R0031 Position (kb) 1276 1277 1278Strain fitness (log2 ratio) -1 0 1at 1275.836 kb on + strand, within DvMF_1049at 1275.972 kb on - strand, within DvMF_1049at 1276.046 kb on + strand, within DvMF_1049at 1276.291 kb on + strand, within DvMF_1049at 1276.589 kb on + strandat 1276.589 kb on + strandat 1276.810 kb on - strandat 1277.338 kb on - strand, within DvMF_1050at 1277.630 kb on - strandat 1277.657 kb on - strandat 1277.672 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Defined MoLS4
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1,275,836 + DvMF_1049 0.52 -0.7
1,275,972 - DvMF_1049 0.63 -0.3
1,276,046 + DvMF_1049 0.69 +0.6
1,276,291 + DvMF_1049 0.88 -0.5
1,276,589 + -0.6
1,276,589 + -0.4
1,276,810 - -0.9
1,277,338 - DvMF_1050 0.69 -1.2
1,277,630 - +0.1
1,277,657 - -1.0
1,277,672 + -0.2

Or see this region's nucleotide sequence