Experiment: Defined MoLS4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt rpsA and DvMF_0310 are separated by 152 nucleotides DvMF_0310 and DvMF_0311 are separated by 368 nucleotides DvMF_0311 and DvMF_0312 are separated by 15 nucleotides
DvMF_0309: rpsA - 30S ribosomal protein S1 (RefSeq), at 357,123 to 358,817
rpsA
DvMF_0310: DvMF_0310 - PpiC-type peptidyl-prolyl cis-trans isomerase (RefSeq), at 358,970 to 359,254
_0310
DvMF_0311: DvMF_0311 - heat shock protein Hsp20 (RefSeq), at 359,623 to 360,051
_0311
DvMF_0312: DvMF_0312 - peptidase S16 lon domain protein (RefSeq), at 360,067 to 362,688
_0312
Position (kb) 359
360
361 Strain fitness (log2 ratio) -1
0
1 at 359.334 kb on + strand at 359.561 kb on + strand at 359.697 kb on + strand, within DvMF_0311 at 359.810 kb on + strand, within DvMF_0311 at 360.005 kb on + strand, within DvMF_0311 at 360.013 kb on - strand at 360.040 kb on - strand at 360.208 kb on + strand at 360.242 kb on + strand at 360.347 kb on - strand, within DvMF_0312 at 360.459 kb on + strand, within DvMF_0312 at 360.475 kb on + strand, within DvMF_0312 at 360.502 kb on + strand, within DvMF_0312 at 360.502 kb on + strand, within DvMF_0312 at 360.669 kb on + strand, within DvMF_0312 at 360.693 kb on - strand, within DvMF_0312 at 360.892 kb on + strand, within DvMF_0312 at 360.913 kb on - strand, within DvMF_0312 at 360.926 kb on - strand, within DvMF_0312 at 361.051 kb on - strand, within DvMF_0312
Per-strain Table
Position Strand Gene LocusTag Fraction Defined MoLS4 remove 359,334 + -0.6 359,561 + +0.5 359,697 + DvMF_0311 0.17 -1.0 359,810 + DvMF_0311 0.44 -1.6 360,005 + DvMF_0311 0.89 -1.0 360,013 - -1.0 360,040 - -0.8 360,208 + -0.3 360,242 + -0.1 360,347 - DvMF_0312 0.11 +0.2 360,459 + DvMF_0312 0.15 -0.0 360,475 + DvMF_0312 0.16 -0.6 360,502 + DvMF_0312 0.17 -0.3 360,502 + DvMF_0312 0.17 -0.2 360,669 + DvMF_0312 0.23 -1.1 360,693 - DvMF_0312 0.24 -0.8 360,892 + DvMF_0312 0.31 -0.2 360,913 - DvMF_0312 0.32 +0.2 360,926 - DvMF_0312 0.33 -0.6 361,051 - DvMF_0312 0.38 +0.1
Or see this region's nucleotide sequence