Experiment: D-Glucose (C) with 20 amino mix
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT3924 and BT3925 are separated by 223 nucleotides BT3925 and BT3926 are separated by 18 nucleotides BT3926 and BT3927 are separated by 109 nucleotides BT3927 and BT3928 are separated by 274 nucleotides
BT3924: BT3924 - ATP-dependent DNA helicase recG (NCBI ptt file), at 5,097,042 to 5,099,138
BT3924
BT3925: BT3925 - nucleoside diphosphate kinase (NCBI ptt file), at 5,099,362 to 5,099,826
BT3925
BT3926: BT3926 - putative peptidase (NCBI ptt file), at 5,099,845 to 5,100,717
BT3926
BT3927: BT3927 - conserved hypothetical protein (NCBI ptt file), at 5,100,827 to 5,101,369
BT3927
BT3928: BT3928 - hypothetical protein (NCBI ptt file), at 5,101,644 to 5,102,675
BT3928
Position (kb)
5099
5100
5101 Strain fitness (log2 ratio)
-2
-1
0
1 at 5099.339 kb on + strand at 5099.445 kb on + strand, within BT3925 at 5099.495 kb on + strand, within BT3925 at 5099.495 kb on + strand, within BT3925 at 5099.587 kb on + strand, within BT3925 at 5099.619 kb on + strand, within BT3925 at 5099.637 kb on + strand, within BT3925 at 5099.709 kb on + strand, within BT3925 at 5099.771 kb on + strand, within BT3925 at 5099.806 kb on + strand at 5100.580 kb on + strand, within BT3926 at 5100.726 kb on + strand at 5100.727 kb on - strand at 5100.734 kb on + strand at 5100.735 kb on - strand at 5100.756 kb on - strand at 5100.795 kb on + strand at 5101.348 kb on + strand at 5101.348 kb on + strand at 5101.375 kb on + strand at 5101.558 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose (C) with 20 amino mix remove 5,099,339 + +0.3 5,099,445 + BT3925 0.18 -0.5 5,099,495 + BT3925 0.29 -0.4 5,099,495 + BT3925 0.29 -1.4 5,099,587 + BT3925 0.48 -1.2 5,099,619 + BT3925 0.55 -1.0 5,099,637 + BT3925 0.59 +0.2 5,099,709 + BT3925 0.75 -0.7 5,099,771 + BT3925 0.88 +0.2 5,099,806 + -0.5 5,100,580 + BT3926 0.84 -0.7 5,100,726 + -0.1 5,100,727 - -1.6 5,100,734 + +0.4 5,100,735 - -2.3 5,100,756 - -0.2 5,100,795 + +0.4 5,101,348 + +0.0 5,101,348 + -1.0 5,101,375 + -2.0 5,101,558 + +0.6
Or see this region's nucleotide sequence