Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT2560

Experiment: D-Glucose (C) with 20 amino mix

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Glucose (C) with 20 amino mix
3,193,405	-		BT2559	0.42	-1.2
3,193,405	-		BT2559	0.42	-0.5
3,193,436	+		BT2559	0.44	-2.7
3,193,437	-		BT2559	0.44	-0.6
3,193,454	+		BT2559	0.45	-0.3
3,193,456	+		BT2559	0.45	-0.7
3,193,457	-		BT2559	0.45	+0.8
3,193,481	+		BT2559	0.46	-0.4
3,193,494	+		BT2559	0.47	-0.6
3,193,495	-		BT2559	0.47	+0.8
3,193,495	-		BT2559	0.47	-1.4
3,193,535	+		BT2559	0.50	+0.6
3,193,536	-		BT2559	0.50	-1.2
3,193,653	+				-0.6
3,193,712	+		BT2559	0.60	-2.0
3,193,712	+		BT2559	0.60	-1.0
3,193,712	+		BT2559	0.60	+1.6
3,193,779	-		BT2559	0.64	+1.0
3,193,779	-		BT2559	0.64	+0.1
3,193,781	-		BT2559	0.65	+2.0
3,193,848	-		BT2559	0.69	-0.2
3,193,856	+		BT2559	0.69	-0.0
3,193,886	-		BT2559	0.71	-0.4
3,193,900	+		BT2559	0.72	-0.0
3,193,900	+		BT2559	0.72	-1.3
3,193,900	+		BT2559	0.72	-0.5
3,193,900	+		BT2559	0.72	+0.1
3,193,900	+		BT2559	0.72	+0.3
3,193,901	-		BT2559	0.72	+2.0
3,193,901	-		BT2559	0.72	-0.5
3,193,905	-		BT2559	0.72	-0.7
3,193,911	+		BT2559	0.72	-0.6
3,193,911	+		BT2559	0.72	+1.0
3,193,912	-		BT2559	0.73	-0.5
3,193,914	-		BT2559	0.73	-0.6
3,194,007	+		BT2559	0.78	-1.1
3,194,008	-		BT2559	0.78	+0.1
3,194,008	-		BT2559	0.78	-0.6
3,194,009	+		BT2559	0.78	-0.7
3,194,009	+		BT2559	0.78	-0.6
3,194,011	+		BT2559	0.79	+0.2
3,194,017	+		BT2559	0.79	-2.6
3,194,018	-		BT2559	0.79	+1.0
3,194,021	+		BT2559	0.79	-1.8
3,194,022	-		BT2559	0.79	-0.5
3,194,022	-		BT2559	0.79	+0.0
3,194,022	-		BT2559	0.79	-0.3
3,194,022	-		BT2559	0.79	-0.3
3,194,022	-		BT2559	0.79	+0.2
3,194,023	+		BT2559	0.79	+0.1
3,194,023	+		BT2559	0.79	+0.3
3,194,023	+		BT2559	0.79	-0.7
3,194,024	-		BT2559	0.79	-1.1
3,194,024	-		BT2559	0.79	-0.6
3,194,024	-		BT2559	0.79	-1.6
3,194,024	-		BT2559	0.79	-2.9
3,194,064	+		BT2559	0.82	-0.5
3,194,065	-		BT2559	0.82	+0.7
3,194,120	+		BT2559	0.85	-0.0
3,194,139	+		BT2559	0.86	+0.1
3,194,140	-		BT2559	0.86	-0.4
3,194,142	-		BT2559	0.86	+1.6
3,194,142	-		BT2559	0.86	-1.3
3,194,179	+		BT2559	0.89	-0.4
3,194,179	+		BT2559	0.89	-0.1
3,194,180	-		BT2559	0.89	-2.1
3,194,189	-		BT2559	0.89	-0.7
3,194,192	+		BT2559	0.90	-0.9
3,194,192	+		BT2559	0.90	-0.0
3,194,260	+				-0.9
3,194,280	-				+0.2
3,194,300	+				-0.4
3,194,346	-				+2.3
3,194,346	-				+0.1
3,194,377	+				+1.0
3,194,436	+				-1.2
3,194,436	+				-0.8
3,194,453	+				-0.6
3,194,459	+				+0.7
3,194,463	+				-0.0
3,194,464	-				+1.0
3,194,474	+				+0.9
3,194,475	-				-1.2
3,194,519	+				+0.6
3,194,553	+				+0.6
3,194,558	+				-0.1
3,194,559	-				-0.2
3,194,559	-				-1.5
3,194,636	+				-0.8
3,194,636	+				+0.6
3,194,636	+				-1.7
3,194,638	+				-0.6
3,194,639	-				-0.8
3,194,652	-				+0.9
3,194,668	-				-0.0
3,194,670	+				+0.4
3,194,671	-				-0.6
3,194,677	+				+1.4
3,194,688	+				-0.6
3,194,722	+		BT2560	0.10	-0.8
3,194,747	+		BT2560	0.11	+0.2
3,194,778	-		BT2560	0.12	-0.6
3,194,778	-		BT2560	0.12	-1.4
3,194,859	-		BT2560	0.14	-1.3
3,194,902	+		BT2560	0.16	-0.4
3,194,903	-		BT2560	0.16	-0.9
3,194,909	+		BT2560	0.16	+1.0
3,194,912	+		BT2560	0.16	-1.6
3,194,927	+		BT2560	0.17	-1.0
3,194,952	-		BT2560	0.17	-0.1
3,194,982	-		BT2560	0.18	-1.3
3,194,990	-		BT2560	0.18	+0.2
3,195,029	+		BT2560	0.20	-0.8
3,195,029	+		BT2560	0.20	+0.1
3,195,029	+		BT2560	0.20	-0.3
3,195,029	+		BT2560	0.20	-1.5
3,195,030	-		BT2560	0.20	-0.8
3,195,030	-		BT2560	0.20	-0.6
3,195,030	-		BT2560	0.20	-0.0
3,195,031	+		BT2560	0.20	-1.5
3,195,031	+		BT2560	0.20	-1.0
3,195,031	+		BT2560	0.20	-0.3
3,195,032	-		BT2560	0.20	-2.6
3,195,060	+		BT2560	0.21	+1.0
3,195,061	-		BT2560	0.21	-0.7
3,195,098	+		BT2560	0.22	+0.4
3,195,098	+		BT2560	0.22	-0.6
3,195,099	-		BT2560	0.22	-0.4
3,195,099	-		BT2560	0.22	-0.8
3,195,162	-		BT2560	0.24	-0.8
3,195,162	-		BT2560	0.24	-0.9
3,195,212	+		BT2560	0.25	-1.0
3,195,213	-		BT2560	0.25	+2.0
3,195,226	+		BT2560	0.26	-2.0
3,195,269	+		BT2560	0.27	+1.0
3,195,269	+		BT2560	0.27	-3.0
3,195,270	-		BT2560	0.27	+1.0
3,195,270	-		BT2560	0.27	-1.8
3,195,283	+		BT2560	0.27	-0.6
3,195,283	+		BT2560	0.27	+1.2
3,195,290	+		BT2560	0.27	-0.5
3,195,291	-		BT2560	0.28	-0.8
3,195,381	-		BT2560	0.30	-0.3
3,195,382	+		BT2560	0.30	+0.6
3,195,383	-		BT2560	0.30	+0.6
3,195,385	-		BT2560	0.30	-2.0
3,195,390	+		BT2560	0.31	-0.7
3,195,450	+		BT2560	0.32	-1.1
3,195,450	+		BT2560	0.32	-0.8
3,195,511	-		BT2560	0.34	-1.0
3,195,556	+		BT2560	0.36	-0.5
3,195,584	+		BT2560	0.36	-0.6
3,195,584	+		BT2560	0.36	-0.8
3,195,651	+		BT2560	0.38	-1.8
3,195,652	-		BT2560	0.38	-1.5
3,195,652	-		BT2560	0.38	-1.3
3,195,684	-		BT2560	0.39	+0.1
3,195,684	-		BT2560	0.39	-0.0
3,195,729	+		BT2560	0.41	-1.3
3,195,735	-		BT2560	0.41	+0.1
3,195,751	-		BT2560	0.41	-0.4
3,195,751	-		BT2560	0.41	-1.3
3,195,815	+		BT2560	0.43	-0.2
3,195,818	+		BT2560	0.43	+0.5
3,195,819	-		BT2560	0.44	-0.5
3,195,916	+		BT2560	0.46	+0.1
3,195,916	+		BT2560	0.46	+0.6
3,195,918	+		BT2560	0.47	-1.9
3,195,918	+		BT2560	0.47	+1.4
3,195,919	-		BT2560	0.47	-1.2
3,195,923	-		BT2560	0.47	-1.6
3,195,939	+		BT2560	0.47	-1.4
3,196,080	-		BT2560	0.51	-0.6
3,196,112	-		BT2560	0.52	-0.6
3,196,163	+		BT2560	0.54	-2.6
3,196,262	+		BT2560	0.57	-1.3
3,196,263	-		BT2560	0.57	-0.0
3,196,432	+		BT2560	0.62	+0.2
3,196,433	-		BT2560	0.62	-0.8
3,196,514	+		BT2560	0.65	-2.9
3,196,515	-		BT2560	0.65	-0.8
3,196,519	+		BT2560	0.65	-0.6
3,196,520	-		BT2560	0.65	+0.0
3,196,571	-		BT2560	0.66	+0.4
3,196,571	-		BT2560	0.66	-1.2
3,196,632	-		BT2560	0.68	-0.8
3,196,632	-		BT2560	0.68	+0.3
3,196,668	-		BT2560	0.69	-0.4
3,196,671	-		BT2560	0.69	+0.6
3,196,703	-		BT2560	0.70	-0.8
3,196,740	-		BT2560	0.71	-1.3
3,196,740	-		BT2560	0.71	+0.7
3,196,773	-		BT2560	0.72	+0.1
3,196,808	+		BT2560	0.73	-0.7
3,196,823	+		BT2560	0.74	-1.4
3,196,823	+		BT2560	0.74	-0.3
3,196,873	+		BT2560	0.75	+1.7
3,196,926	+		BT2560	0.77	-0.5
3,196,926	+		BT2560	0.77	+0.1
3,196,927	-		BT2560	0.77	-0.0
3,196,927	-		BT2560	0.77	-1.5
3,197,059	+		BT2560	0.81	+0.3
3,197,193	+		BT2560	0.85	-0.4
3,197,193	+		BT2560	0.85	-0.0
3,197,193	+		BT2560	0.85	-0.5
3,197,194	-		BT2560	0.85	+0.1
3,197,194	-		BT2560	0.85	+0.9
3,197,197	+		BT2560	0.85	+2.0
3,197,197	+		BT2560	0.85	+0.6
3,197,198	-		BT2560	0.85	-1.6
3,197,208	-		BT2560	0.86	-0.6
3,197,214	-		BT2560	0.86	+0.2
3,197,238	-		BT2560	0.86	-0.0
3,197,265	-		BT2560	0.87	-1.2
3,197,277	-		BT2560	0.88	-0.7
3,197,306	+		BT2560	0.89	+0.2
3,197,307	-		BT2560	0.89	-1.2
3,197,307	-		BT2560	0.89	-3.3
3,197,307	-		BT2560	0.89	-0.9
3,197,382	+				+1.0
3,197,405	+				+0.8
3,197,423	-				+0.3
3,197,481	-				+0.3
3,197,487	+				+0.4
3,197,493	-				+0.2
3,197,493	-				-0.0
3,197,493	-				+0.4
3,197,496	+				-0.5
3,197,497	-				+2.1
3,197,527	+				+0.5
3,197,539	+				+0.1
3,197,605	-				-1.6
3,197,652	+				+0.7
3,197,671	-				+0.0
3,197,695	-				+0.6
3,197,702	+				+0.6
3,197,858	+				+1.0
3,197,858	+				+1.0
3,197,858	+				-1.0
3,197,859	-				+2.0
3,197,862	+				-0.9
3,197,862	+				-0.4
3,197,863	-				+0.0
3,197,863	-				+0.4
3,197,863	-				-1.5
3,197,872	+				-1.3
3,197,873	-				-0.3
3,197,904	+				-1.3
3,197,913	-				+1.0
3,197,919	+				-0.9
3,197,919	+				-1.5
3,197,920	-				+0.3
3,197,937	+				-1.2
3,197,964	+				-1.7
3,198,124	+		BT2561	0.17	-1.3
3,198,125	-		BT2561	0.17	+0.7
3,198,181	-		BT2561	0.23	-0.2
3,198,204	+		BT2561	0.26	-0.6
3,198,211	-		BT2561	0.26	+0.3
3,198,268	+		BT2561	0.32	-0.5
3,198,268	+		BT2561	0.32	-0.1
3,198,300	+		BT2561	0.36	+0.4
3,198,306	+		BT2561	0.37	+1.0
3,198,334	+		BT2561	0.40	-1.3
3,198,387	-		BT2561	0.45	+1.0
3,198,510	+		BT2561	0.58	+0.4
3,198,562	+		BT2561	0.64	-1.2
3,198,616	+		BT2561	0.70	+0.5
3,198,617	-		BT2561	0.70	-0.2
3,198,622	-		BT2561	0.70	-0.2
3,198,659	+		BT2561	0.74	+0.8
3,198,660	-		BT2561	0.74	+0.7
3,198,665	+		BT2561	0.75	+0.8
3,198,678	-		BT2561	0.76	+1.0
3,198,678	-		BT2561	0.76	+0.3