Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.874.1

Experiment: Supernatant; Xanthomonas campestris pv. campestris (strain 8004) grown in 0.1x TSB, 0.4x

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.873.1 and Xcc-8004.874.1 are separated by 10 nucleotidesXcc-8004.874.1 and Xcc-8004.875.1 are separated by 301 nucleotidesXcc-8004.875.1 and Xcc-8004.876.1 overlap by 53 nucleotides Xcc-8004.873.1: Xcc-8004.873.1 - S-(hydroxymethyl)glutathione dehydrogenase (EC 1.1.1.284), at 821,164 to 822,270 Xcc-8004.873.1 Xcc-8004.874.1: Xcc-8004.874.1 - S-(hydroxymethyl)glutathione dehydrogenase (EC 1.1.1.284), at 822,281 to 824,665 Xcc-8004.874.1 Xcc-8004.875.1: Xcc-8004.875.1 - Mobile element protein, at 824,967 to 825,437 Xcc-8004.875.1 Xcc-8004.876.1: Xcc-8004.876.1 - Mobile element protein, at 825,385 to 825,771 Xcc-8004.876.1 Position (kb) 822 823 824 825Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 821.572 kb on - strand, within Xcc-8004.873.1at 821.591 kb on - strand, within Xcc-8004.873.1at 821.591 kb on - strand, within Xcc-8004.873.1at 822.136 kb on + strand, within Xcc-8004.873.1at 822.137 kb on - strand, within Xcc-8004.873.1at 822.148 kb on + strand, within Xcc-8004.873.1at 822.471 kb on - strandat 822.471 kb on - strandat 822.659 kb on + strand, within Xcc-8004.874.1at 822.890 kb on + strand, within Xcc-8004.874.1at 822.890 kb on + strand, within Xcc-8004.874.1at 822.890 kb on + strand, within Xcc-8004.874.1at 822.890 kb on + strand, within Xcc-8004.874.1at 822.890 kb on + strand, within Xcc-8004.874.1at 823.124 kb on + strand, within Xcc-8004.874.1at 823.124 kb on + strand, within Xcc-8004.874.1at 823.125 kb on - strand, within Xcc-8004.874.1at 823.148 kb on + strand, within Xcc-8004.874.1at 823.148 kb on + strand, within Xcc-8004.874.1at 823.149 kb on - strand, within Xcc-8004.874.1at 823.149 kb on - strand, within Xcc-8004.874.1at 823.149 kb on - strand, within Xcc-8004.874.1at 823.149 kb on - strand, within Xcc-8004.874.1at 823.180 kb on + strand, within Xcc-8004.874.1at 823.180 kb on + strand, within Xcc-8004.874.1at 823.244 kb on + strand, within Xcc-8004.874.1at 823.245 kb on - strand, within Xcc-8004.874.1at 823.295 kb on + strand, within Xcc-8004.874.1at 823.295 kb on + strand, within Xcc-8004.874.1at 823.295 kb on + strand, within Xcc-8004.874.1at 823.295 kb on + strand, within Xcc-8004.874.1at 823.328 kb on + strand, within Xcc-8004.874.1at 823.328 kb on + strand, within Xcc-8004.874.1at 823.388 kb on - strand, within Xcc-8004.874.1at 823.411 kb on + strand, within Xcc-8004.874.1at 823.412 kb on - strand, within Xcc-8004.874.1at 823.520 kb on + strand, within Xcc-8004.874.1at 823.766 kb on + strand, within Xcc-8004.874.1at 823.766 kb on + strand, within Xcc-8004.874.1at 823.766 kb on + strand, within Xcc-8004.874.1at 823.767 kb on - strand, within Xcc-8004.874.1at 823.767 kb on - strand, within Xcc-8004.874.1at 823.827 kb on - strand, within Xcc-8004.874.1at 823.827 kb on - strand, within Xcc-8004.874.1at 823.958 kb on + strand, within Xcc-8004.874.1at 823.958 kb on + strand, within Xcc-8004.874.1at 824.076 kb on - strand, within Xcc-8004.874.1at 824.102 kb on + strand, within Xcc-8004.874.1at 824.168 kb on + strand, within Xcc-8004.874.1at 824.322 kb on + strand, within Xcc-8004.874.1at 824.407 kb on + strand, within Xcc-8004.874.1at 824.517 kb on - strandat 824.525 kb on + strandat 824.525 kb on + strandat 824.525 kb on + strandat 824.636 kb on + strandat 824.696 kb on - strandat 824.953 kb on - strandat 824.957 kb on - strandat 824.957 kb on - strandat 824.957 kb on - strandat 825.421 kb on - strandat 825.633 kb on - strand, within Xcc-8004.876.1at 825.633 kb on - strand, within Xcc-8004.876.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Xanthomonas campestris pv. campestris (strain 8004) grown in 0.1x TSB, 0.4x
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821,572 - Xcc-8004.873.1 0.37 +0.3
821,591 - Xcc-8004.873.1 0.39 +0.3
821,591 - Xcc-8004.873.1 0.39 +1.0
822,136 + Xcc-8004.873.1 0.88 +1.6
822,137 - Xcc-8004.873.1 0.88 +0.9
822,148 + Xcc-8004.873.1 0.89 -0.3
822,471 - -0.5
822,471 - +0.3
822,659 + Xcc-8004.874.1 0.16 +0.2
822,890 + Xcc-8004.874.1 0.26 -0.3
822,890 + Xcc-8004.874.1 0.26 +0.7
822,890 + Xcc-8004.874.1 0.26 +1.9
822,890 + Xcc-8004.874.1 0.26 -0.2
822,890 + Xcc-8004.874.1 0.26 +1.9
823,124 + Xcc-8004.874.1 0.35 +0.1
823,124 + Xcc-8004.874.1 0.35 -0.8
823,125 - Xcc-8004.874.1 0.35 -1.1
823,148 + Xcc-8004.874.1 0.36 +0.6
823,148 + Xcc-8004.874.1 0.36 +0.1
823,149 - Xcc-8004.874.1 0.36 +0.2
823,149 - Xcc-8004.874.1 0.36 +1.0
823,149 - Xcc-8004.874.1 0.36 +0.7
823,149 - Xcc-8004.874.1 0.36 +0.7
823,180 + Xcc-8004.874.1 0.38 +0.3
823,180 + Xcc-8004.874.1 0.38 -1.6
823,244 + Xcc-8004.874.1 0.40 +0.6
823,245 - Xcc-8004.874.1 0.40 +1.1
823,295 + Xcc-8004.874.1 0.43 -0.7
823,295 + Xcc-8004.874.1 0.43 +0.7
823,295 + Xcc-8004.874.1 0.43 -3.5
823,295 + Xcc-8004.874.1 0.43 +1.3
823,328 + Xcc-8004.874.1 0.44 +1.3
823,328 + Xcc-8004.874.1 0.44 -1.2
823,388 - Xcc-8004.874.1 0.46 -0.3
823,411 + Xcc-8004.874.1 0.47 -0.7
823,412 - Xcc-8004.874.1 0.47 +0.6
823,520 + Xcc-8004.874.1 0.52 +0.7
823,766 + Xcc-8004.874.1 0.62 -0.0
823,766 + Xcc-8004.874.1 0.62 +0.1
823,766 + Xcc-8004.874.1 0.62 +0.7
823,767 - Xcc-8004.874.1 0.62 +0.6
823,767 - Xcc-8004.874.1 0.62 -1.0
823,827 - Xcc-8004.874.1 0.65 -0.1
823,827 - Xcc-8004.874.1 0.65 +1.4
823,958 + Xcc-8004.874.1 0.70 +0.1
823,958 + Xcc-8004.874.1 0.70 -0.5
824,076 - Xcc-8004.874.1 0.75 +1.7
824,102 + Xcc-8004.874.1 0.76 +0.1
824,168 + Xcc-8004.874.1 0.79 +0.7
824,322 + Xcc-8004.874.1 0.86 +0.1
824,407 + Xcc-8004.874.1 0.89 -0.1
824,517 - +0.5
824,525 + +0.2
824,525 + -0.0
824,525 + +1.1
824,636 + -1.4
824,696 - +0.4
824,953 - +0.4
824,957 - +0.3
824,957 - -0.2
824,957 - +0.1
825,421 - -1.0
825,633 - Xcc-8004.876.1 0.64 -0.6
825,633 - Xcc-8004.876.1 0.64 -0.3

Or see this region's nucleotide sequence