Experiment: Supernatant; Xanthomonas campestris pv. campestris (strain 8004) grown in 0.1x TSB, 0.4x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.4866.1 and Xcc-8004.4867.1 are separated by 4 nucleotides Xcc-8004.4867.1 and Xcc-8004.4868.1 are separated by 17 nucleotides Xcc-8004.4868.1 and Xcc-8004.4869.1 are separated by 333 nucleotides
Xcc-8004.4866.1: Xcc-8004.4866.1 - Mobile element protein, at 4,625,654 to 4,625,779
Xcc-8004.4866.1
Xcc-8004.4867.1: Xcc-8004.4867.1 - Mobile element protein, at 4,625,784 to 4,626,638
Xcc-8004.4867.1
Xcc-8004.4868.1: Xcc-8004.4868.1 - Mobile element protein, at 4,626,656 to 4,626,928
Xcc-8004.4868.1
Xcc-8004.4869.1: Xcc-8004.4869.1 - hypothetical protein, at 4,627,262 to 4,628,275
Xcc-8004.4869.1
Position (kb) 4626
4627 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 4626.971 kb on + strand at 4626.971 kb on + strand at 4626.987 kb on + strand at 4627.015 kb on - strand at 4627.028 kb on + strand at 4627.028 kb on + strand at 4627.029 kb on - strand at 4627.041 kb on - strand at 4627.073 kb on - strand at 4627.086 kb on + strand at 4627.086 kb on + strand at 4627.086 kb on + strand at 4627.086 kb on + strand at 4627.086 kb on + strand at 4627.087 kb on - strand at 4627.087 kb on - strand at 4627.087 kb on - strand at 4627.091 kb on - strand at 4627.103 kb on + strand at 4627.103 kb on + strand at 4627.103 kb on + strand at 4627.103 kb on + strand at 4627.104 kb on - strand at 4627.104 kb on - strand at 4627.110 kb on + strand at 4627.111 kb on - strand at 4627.172 kb on + strand at 4627.172 kb on + strand at 4627.172 kb on + strand at 4627.173 kb on - strand at 4627.173 kb on - strand at 4627.173 kb on - strand at 4627.173 kb on - strand at 4627.175 kb on + strand at 4627.175 kb on + strand at 4627.175 kb on + strand at 4627.179 kb on - strand at 4627.192 kb on + strand at 4627.193 kb on - strand at 4627.223 kb on - strand at 4627.229 kb on + strand at 4627.231 kb on + strand at 4627.232 kb on - strand at 4627.244 kb on + strand at 4627.259 kb on + strand at 4627.259 kb on + strand at 4627.260 kb on - strand at 4627.262 kb on - strand at 4627.357 kb on + strand at 4627.357 kb on + strand at 4627.384 kb on + strand, within Xcc-8004.4869.1 at 4627.409 kb on + strand, within Xcc-8004.4869.1 at 4627.409 kb on + strand, within Xcc-8004.4869.1 at 4627.410 kb on - strand, within Xcc-8004.4869.1 at 4627.410 kb on - strand, within Xcc-8004.4869.1 at 4627.410 kb on - strand, within Xcc-8004.4869.1 at 4627.410 kb on - strand, within Xcc-8004.4869.1 at 4627.410 kb on - strand, within Xcc-8004.4869.1 at 4627.416 kb on + strand, within Xcc-8004.4869.1 at 4627.417 kb on - strand, within Xcc-8004.4869.1 at 4627.474 kb on + strand, within Xcc-8004.4869.1 at 4627.474 kb on + strand, within Xcc-8004.4869.1 at 4627.475 kb on - strand, within Xcc-8004.4869.1 at 4627.475 kb on - strand, within Xcc-8004.4869.1 at 4627.475 kb on - strand, within Xcc-8004.4869.1 at 4627.475 kb on - strand, within Xcc-8004.4869.1 at 4627.515 kb on + strand, within Xcc-8004.4869.1 at 4627.515 kb on + strand, within Xcc-8004.4869.1 at 4627.515 kb on + strand, within Xcc-8004.4869.1 at 4627.515 kb on + strand, within Xcc-8004.4869.1 at 4627.516 kb on - strand, within Xcc-8004.4869.1 at 4627.516 kb on - strand, within Xcc-8004.4869.1 at 4627.534 kb on + strand, within Xcc-8004.4869.1 at 4627.534 kb on + strand, within Xcc-8004.4869.1 at 4627.534 kb on + strand, within Xcc-8004.4869.1 at 4627.535 kb on - strand, within Xcc-8004.4869.1 at 4627.535 kb on - strand, within Xcc-8004.4869.1 at 4627.535 kb on - strand, within Xcc-8004.4869.1 at 4627.535 kb on - strand, within Xcc-8004.4869.1 at 4627.570 kb on + strand, within Xcc-8004.4869.1 at 4627.570 kb on + strand, within Xcc-8004.4869.1 at 4627.571 kb on - strand, within Xcc-8004.4869.1 at 4627.571 kb on - strand, within Xcc-8004.4869.1 at 4627.571 kb on - strand, within Xcc-8004.4869.1 at 4627.571 kb on - strand, within Xcc-8004.4869.1 at 4627.673 kb on + strand, within Xcc-8004.4869.1 at 4627.673 kb on + strand, within Xcc-8004.4869.1 at 4627.673 kb on + strand, within Xcc-8004.4869.1 at 4627.673 kb on + strand, within Xcc-8004.4869.1 at 4627.673 kb on + strand, within Xcc-8004.4869.1 at 4627.673 kb on + strand, within Xcc-8004.4869.1 at 4627.674 kb on - strand, within Xcc-8004.4869.1 at 4627.674 kb on - strand, within Xcc-8004.4869.1 at 4627.677 kb on + strand, within Xcc-8004.4869.1 at 4627.691 kb on + strand, within Xcc-8004.4869.1 at 4627.691 kb on + strand, within Xcc-8004.4869.1 at 4627.691 kb on + strand, within Xcc-8004.4869.1 at 4627.693 kb on + strand, within Xcc-8004.4869.1 at 4627.693 kb on + strand, within Xcc-8004.4869.1 at 4627.694 kb on - strand, within Xcc-8004.4869.1 at 4627.727 kb on - strand, within Xcc-8004.4869.1 at 4627.802 kb on - strand, within Xcc-8004.4869.1 at 4627.802 kb on - strand, within Xcc-8004.4869.1 at 4627.810 kb on - strand, within Xcc-8004.4869.1 at 4627.810 kb on - strand, within Xcc-8004.4869.1 at 4627.818 kb on + strand, within Xcc-8004.4869.1 at 4627.819 kb on - strand, within Xcc-8004.4869.1 at 4627.819 kb on - strand, within Xcc-8004.4869.1 at 4627.843 kb on + strand, within Xcc-8004.4869.1 at 4627.843 kb on + strand, within Xcc-8004.4869.1 at 4627.843 kb on + strand, within Xcc-8004.4869.1 at 4627.843 kb on + strand, within Xcc-8004.4869.1 at 4627.844 kb on - strand, within Xcc-8004.4869.1 at 4627.858 kb on + strand, within Xcc-8004.4869.1 at 4627.858 kb on + strand, within Xcc-8004.4869.1 at 4627.894 kb on + strand, within Xcc-8004.4869.1 at 4627.901 kb on + strand, within Xcc-8004.4869.1
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Xanthomonas campestris pv. campestris (strain 8004) grown in 0.1x TSB, 0.4x remove 4,626,971 + -0.4 4,626,971 + -1.4 4,626,987 + +1.3 4,627,015 - -0.8 4,627,028 + +0.1 4,627,028 + -2.1 4,627,029 - -1.1 4,627,041 - +0.4 4,627,073 - +1.1 4,627,086 + -0.8 4,627,086 + -0.4 4,627,086 + -0.5 4,627,086 + +0.6 4,627,086 + -0.1 4,627,087 - -1.4 4,627,087 - -0.9 4,627,087 - +0.1 4,627,091 - -1.1 4,627,103 + +0.8 4,627,103 + +0.8 4,627,103 + -0.2 4,627,103 + -0.1 4,627,104 - -0.4 4,627,104 - +0.3 4,627,110 + +1.8 4,627,111 - +0.9 4,627,172 + +2.5 4,627,172 + +1.7 4,627,172 + +0.4 4,627,173 - +0.3 4,627,173 - +0.2 4,627,173 - -0.2 4,627,173 - +0.5 4,627,175 + +0.8 4,627,175 + +0.8 4,627,175 + +0.3 4,627,179 - -0.1 4,627,192 + -0.6 4,627,193 - -1.5 4,627,223 - -0.4 4,627,229 + -1.2 4,627,231 + -0.0 4,627,232 - -1.4 4,627,244 + -1.5 4,627,259 + +0.0 4,627,259 + +0.6 4,627,260 - -0.5 4,627,262 - +1.3 4,627,357 + +0.4 4,627,357 + -0.4 4,627,384 + Xcc-8004.4869.1 0.12 +0.3 4,627,409 + Xcc-8004.4869.1 0.14 +1.0 4,627,409 + Xcc-8004.4869.1 0.14 -1.1 4,627,410 - Xcc-8004.4869.1 0.15 -1.1 4,627,410 - Xcc-8004.4869.1 0.15 +0.4 4,627,410 - Xcc-8004.4869.1 0.15 +0.1 4,627,410 - Xcc-8004.4869.1 0.15 +0.5 4,627,410 - Xcc-8004.4869.1 0.15 +0.8 4,627,416 + Xcc-8004.4869.1 0.15 -0.3 4,627,417 - Xcc-8004.4869.1 0.15 -0.4 4,627,474 + Xcc-8004.4869.1 0.21 +0.4 4,627,474 + Xcc-8004.4869.1 0.21 +0.2 4,627,475 - Xcc-8004.4869.1 0.21 -0.9 4,627,475 - Xcc-8004.4869.1 0.21 +0.5 4,627,475 - Xcc-8004.4869.1 0.21 +0.2 4,627,475 - Xcc-8004.4869.1 0.21 -0.1 4,627,515 + Xcc-8004.4869.1 0.25 +0.5 4,627,515 + Xcc-8004.4869.1 0.25 +1.4 4,627,515 + Xcc-8004.4869.1 0.25 -0.6 4,627,515 + Xcc-8004.4869.1 0.25 +0.5 4,627,516 - Xcc-8004.4869.1 0.25 -0.6 4,627,516 - Xcc-8004.4869.1 0.25 +0.8 4,627,534 + Xcc-8004.4869.1 0.27 -0.7 4,627,534 + Xcc-8004.4869.1 0.27 +0.9 4,627,534 + Xcc-8004.4869.1 0.27 +0.3 4,627,535 - Xcc-8004.4869.1 0.27 -0.6 4,627,535 - Xcc-8004.4869.1 0.27 -0.1 4,627,535 - Xcc-8004.4869.1 0.27 -2.0 4,627,535 - Xcc-8004.4869.1 0.27 -0.1 4,627,570 + Xcc-8004.4869.1 0.30 +0.1 4,627,570 + Xcc-8004.4869.1 0.30 +0.8 4,627,571 - Xcc-8004.4869.1 0.30 +1.1 4,627,571 - Xcc-8004.4869.1 0.30 -0.1 4,627,571 - Xcc-8004.4869.1 0.30 +0.2 4,627,571 - Xcc-8004.4869.1 0.30 +0.5 4,627,673 + Xcc-8004.4869.1 0.41 -2.0 4,627,673 + Xcc-8004.4869.1 0.41 -1.2 4,627,673 + Xcc-8004.4869.1 0.41 -0.6 4,627,673 + Xcc-8004.4869.1 0.41 -0.7 4,627,673 + Xcc-8004.4869.1 0.41 -2.0 4,627,673 + Xcc-8004.4869.1 0.41 -0.7 4,627,674 - Xcc-8004.4869.1 0.41 -0.4 4,627,674 - Xcc-8004.4869.1 0.41 -0.3 4,627,677 + Xcc-8004.4869.1 0.41 -0.0 4,627,691 + Xcc-8004.4869.1 0.42 -0.0 4,627,691 + Xcc-8004.4869.1 0.42 +1.2 4,627,691 + Xcc-8004.4869.1 0.42 +1.1 4,627,693 + Xcc-8004.4869.1 0.43 +0.4 4,627,693 + Xcc-8004.4869.1 0.43 +0.5 4,627,694 - Xcc-8004.4869.1 0.43 +0.5 4,627,727 - Xcc-8004.4869.1 0.46 -0.2 4,627,802 - Xcc-8004.4869.1 0.53 -0.1 4,627,802 - Xcc-8004.4869.1 0.53 -0.6 4,627,810 - Xcc-8004.4869.1 0.54 -2.0 4,627,810 - Xcc-8004.4869.1 0.54 -0.6 4,627,818 + Xcc-8004.4869.1 0.55 +0.1 4,627,819 - Xcc-8004.4869.1 0.55 -0.6 4,627,819 - Xcc-8004.4869.1 0.55 +0.3 4,627,843 + Xcc-8004.4869.1 0.57 -1.5 4,627,843 + Xcc-8004.4869.1 0.57 -0.7 4,627,843 + Xcc-8004.4869.1 0.57 +3.4 4,627,843 + Xcc-8004.4869.1 0.57 +0.8 4,627,844 - Xcc-8004.4869.1 0.57 -2.1 4,627,858 + Xcc-8004.4869.1 0.59 +0.5 4,627,858 + Xcc-8004.4869.1 0.59 +0.2 4,627,894 + Xcc-8004.4869.1 0.62 -0.7 4,627,901 + Xcc-8004.4869.1 0.63 -1.2
Or see this region's nucleotide sequence