Experiment: Supernatant; Xanthomonas campestris pv. campestris (strain 8004) grown in 0.1x TSB, 0.4x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.3776.1 and Xcc-8004.3777.1 are separated by 276 nucleotides Xcc-8004.3777.1 and Xcc-8004.3778.1 are separated by 149 nucleotides
Xcc-8004.3776.1: Xcc-8004.3776.1 - Aldose 1-epimerase (EC 5.1.3.3), at 3,650,192 to 3,651,247
Xcc-8004.3776.1
Xcc-8004.3777.1: Xcc-8004.3777.1 - Alpha-N-arabinofuranosidase 2 (EC 3.2.1.55), at 3,651,524 to 3,653,104
Xcc-8004.3777.1
Xcc-8004.3778.1: Xcc-8004.3778.1 - Transcriptional regulator, at 3,653,254 to 3,654,261
Xcc-8004.3778.1
Position (kb) 3651
3652
3653
3654 Strain fitness (log2 ratio) -1
0
1
2 at 3650.658 kb on + strand, within Xcc-8004.3776.1 at 3650.658 kb on + strand, within Xcc-8004.3776.1 at 3650.681 kb on + strand, within Xcc-8004.3776.1 at 3650.681 kb on + strand, within Xcc-8004.3776.1 at 3650.681 kb on + strand, within Xcc-8004.3776.1 at 3650.682 kb on - strand, within Xcc-8004.3776.1 at 3650.682 kb on - strand, within Xcc-8004.3776.1 at 3650.682 kb on - strand, within Xcc-8004.3776.1 at 3650.682 kb on - strand, within Xcc-8004.3776.1 at 3650.682 kb on - strand, within Xcc-8004.3776.1 at 3650.727 kb on + strand, within Xcc-8004.3776.1 at 3650.822 kb on + strand, within Xcc-8004.3776.1 at 3650.823 kb on - strand, within Xcc-8004.3776.1 at 3650.841 kb on + strand, within Xcc-8004.3776.1 at 3650.868 kb on + strand, within Xcc-8004.3776.1 at 3650.868 kb on + strand, within Xcc-8004.3776.1 at 3650.868 kb on + strand, within Xcc-8004.3776.1 at 3650.869 kb on - strand, within Xcc-8004.3776.1 at 3650.945 kb on + strand, within Xcc-8004.3776.1 at 3650.945 kb on + strand, within Xcc-8004.3776.1 at 3650.945 kb on + strand, within Xcc-8004.3776.1 at 3650.945 kb on + strand, within Xcc-8004.3776.1 at 3650.945 kb on + strand, within Xcc-8004.3776.1 at 3650.945 kb on + strand, within Xcc-8004.3776.1 at 3650.945 kb on + strand, within Xcc-8004.3776.1 at 3650.945 kb on + strand, within Xcc-8004.3776.1 at 3650.945 kb on + strand, within Xcc-8004.3776.1 at 3650.945 kb on + strand, within Xcc-8004.3776.1 at 3650.946 kb on - strand, within Xcc-8004.3776.1 at 3650.946 kb on - strand, within Xcc-8004.3776.1 at 3650.946 kb on - strand, within Xcc-8004.3776.1 at 3650.946 kb on - strand, within Xcc-8004.3776.1 at 3650.946 kb on - strand, within Xcc-8004.3776.1 at 3650.946 kb on - strand, within Xcc-8004.3776.1 at 3650.946 kb on - strand, within Xcc-8004.3776.1 at 3650.946 kb on - strand, within Xcc-8004.3776.1 at 3650.946 kb on - strand, within Xcc-8004.3776.1 at 3650.946 kb on - strand, within Xcc-8004.3776.1 at 3650.946 kb on - strand, within Xcc-8004.3776.1 at 3651.069 kb on + strand, within Xcc-8004.3776.1 at 3651.154 kb on - strand at 3651.154 kb on - strand at 3651.442 kb on + strand at 3651.443 kb on - strand at 3651.605 kb on - strand at 3651.651 kb on + strand at 3651.651 kb on + strand at 3651.651 kb on + strand at 3651.651 kb on + strand at 3651.652 kb on - strand at 3651.821 kb on - strand, within Xcc-8004.3777.1 at 3651.855 kb on - strand, within Xcc-8004.3777.1 at 3651.855 kb on - strand, within Xcc-8004.3777.1 at 3651.992 kb on + strand, within Xcc-8004.3777.1 at 3651.992 kb on + strand, within Xcc-8004.3777.1 at 3652.012 kb on + strand, within Xcc-8004.3777.1 at 3652.049 kb on + strand, within Xcc-8004.3777.1 at 3652.049 kb on + strand, within Xcc-8004.3777.1 at 3652.049 kb on + strand, within Xcc-8004.3777.1 at 3652.049 kb on + strand, within Xcc-8004.3777.1 at 3652.049 kb on + strand, within Xcc-8004.3777.1 at 3652.050 kb on - strand, within Xcc-8004.3777.1 at 3652.050 kb on - strand, within Xcc-8004.3777.1 at 3652.050 kb on - strand, within Xcc-8004.3777.1 at 3652.050 kb on - strand, within Xcc-8004.3777.1 at 3652.182 kb on - strand, within Xcc-8004.3777.1 at 3652.182 kb on - strand, within Xcc-8004.3777.1 at 3652.196 kb on + strand, within Xcc-8004.3777.1 at 3652.340 kb on + strand, within Xcc-8004.3777.1 at 3652.340 kb on + strand, within Xcc-8004.3777.1 at 3652.341 kb on - strand, within Xcc-8004.3777.1 at 3652.341 kb on - strand, within Xcc-8004.3777.1 at 3652.341 kb on - strand, within Xcc-8004.3777.1 at 3652.343 kb on + strand, within Xcc-8004.3777.1 at 3652.343 kb on + strand, within Xcc-8004.3777.1 at 3652.344 kb on - strand, within Xcc-8004.3777.1 at 3652.344 kb on - strand, within Xcc-8004.3777.1 at 3652.344 kb on - strand, within Xcc-8004.3777.1 at 3652.527 kb on - strand, within Xcc-8004.3777.1 at 3652.724 kb on + strand, within Xcc-8004.3777.1 at 3652.724 kb on + strand, within Xcc-8004.3777.1 at 3652.725 kb on - strand, within Xcc-8004.3777.1 at 3652.725 kb on - strand, within Xcc-8004.3777.1 at 3652.725 kb on - strand, within Xcc-8004.3777.1 at 3652.731 kb on + strand, within Xcc-8004.3777.1 at 3652.731 kb on + strand, within Xcc-8004.3777.1 at 3652.732 kb on - strand, within Xcc-8004.3777.1 at 3652.742 kb on + strand, within Xcc-8004.3777.1 at 3652.865 kb on + strand, within Xcc-8004.3777.1 at 3652.865 kb on + strand, within Xcc-8004.3777.1 at 3652.865 kb on + strand, within Xcc-8004.3777.1 at 3652.865 kb on + strand, within Xcc-8004.3777.1 at 3652.865 kb on + strand, within Xcc-8004.3777.1 at 3652.865 kb on + strand, within Xcc-8004.3777.1 at 3652.865 kb on + strand, within Xcc-8004.3777.1 at 3652.865 kb on + strand, within Xcc-8004.3777.1 at 3652.865 kb on + strand, within Xcc-8004.3777.1 at 3652.866 kb on - strand, within Xcc-8004.3777.1 at 3652.866 kb on - strand, within Xcc-8004.3777.1 at 3652.866 kb on - strand, within Xcc-8004.3777.1 at 3652.866 kb on - strand, within Xcc-8004.3777.1 at 3652.866 kb on - strand, within Xcc-8004.3777.1 at 3652.866 kb on - strand, within Xcc-8004.3777.1 at 3653.097 kb on + strand at 3653.097 kb on + strand at 3653.097 kb on + strand at 3653.098 kb on - strand at 3653.098 kb on - strand at 3653.098 kb on - strand at 3653.132 kb on - strand at 3653.429 kb on + strand, within Xcc-8004.3778.1 at 3653.516 kb on + strand, within Xcc-8004.3778.1 at 3653.517 kb on - strand, within Xcc-8004.3778.1 at 3653.517 kb on - strand, within Xcc-8004.3778.1 at 3653.664 kb on - strand, within Xcc-8004.3778.1 at 3653.664 kb on - strand, within Xcc-8004.3778.1 at 3653.705 kb on + strand, within Xcc-8004.3778.1 at 3653.705 kb on + strand, within Xcc-8004.3778.1 at 3653.705 kb on + strand, within Xcc-8004.3778.1 at 3653.751 kb on - strand, within Xcc-8004.3778.1 at 3653.751 kb on - strand, within Xcc-8004.3778.1 at 3653.751 kb on - strand, within Xcc-8004.3778.1 at 3653.768 kb on - strand, within Xcc-8004.3778.1 at 3653.909 kb on + strand, within Xcc-8004.3778.1 at 3654.068 kb on + strand, within Xcc-8004.3778.1 at 3654.068 kb on + strand, within Xcc-8004.3778.1 at 3654.068 kb on + strand, within Xcc-8004.3778.1 at 3654.069 kb on - strand, within Xcc-8004.3778.1
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Xanthomonas campestris pv. campestris (strain 8004) grown in 0.1x TSB, 0.4x remove 3,650,658 + Xcc-8004.3776.1 0.44 -0.3 3,650,658 + Xcc-8004.3776.1 0.44 -1.3 3,650,681 + Xcc-8004.3776.1 0.46 -0.1 3,650,681 + Xcc-8004.3776.1 0.46 +0.9 3,650,681 + Xcc-8004.3776.1 0.46 -1.7 3,650,682 - Xcc-8004.3776.1 0.46 +0.4 3,650,682 - Xcc-8004.3776.1 0.46 -1.4 3,650,682 - Xcc-8004.3776.1 0.46 +1.6 3,650,682 - Xcc-8004.3776.1 0.46 +0.3 3,650,682 - Xcc-8004.3776.1 0.46 +0.9 3,650,727 + Xcc-8004.3776.1 0.51 -0.7 3,650,822 + Xcc-8004.3776.1 0.60 -0.7 3,650,823 - Xcc-8004.3776.1 0.60 +0.0 3,650,841 + Xcc-8004.3776.1 0.61 +0.9 3,650,868 + Xcc-8004.3776.1 0.64 +1.9 3,650,868 + Xcc-8004.3776.1 0.64 +0.7 3,650,868 + Xcc-8004.3776.1 0.64 +0.6 3,650,869 - Xcc-8004.3776.1 0.64 +0.5 3,650,945 + Xcc-8004.3776.1 0.71 -1.3 3,650,945 + Xcc-8004.3776.1 0.71 +0.3 3,650,945 + Xcc-8004.3776.1 0.71 -0.2 3,650,945 + Xcc-8004.3776.1 0.71 +0.4 3,650,945 + Xcc-8004.3776.1 0.71 +0.3 3,650,945 + Xcc-8004.3776.1 0.71 -0.7 3,650,945 + Xcc-8004.3776.1 0.71 -0.6 3,650,945 + Xcc-8004.3776.1 0.71 +0.9 3,650,945 + Xcc-8004.3776.1 0.71 -0.4 3,650,945 + Xcc-8004.3776.1 0.71 +0.9 3,650,946 - Xcc-8004.3776.1 0.71 +0.4 3,650,946 - Xcc-8004.3776.1 0.71 -0.7 3,650,946 - Xcc-8004.3776.1 0.71 +0.5 3,650,946 - Xcc-8004.3776.1 0.71 -1.1 3,650,946 - Xcc-8004.3776.1 0.71 +1.5 3,650,946 - Xcc-8004.3776.1 0.71 +0.3 3,650,946 - Xcc-8004.3776.1 0.71 +0.9 3,650,946 - Xcc-8004.3776.1 0.71 +0.5 3,650,946 - Xcc-8004.3776.1 0.71 +0.2 3,650,946 - Xcc-8004.3776.1 0.71 +0.1 3,650,946 - Xcc-8004.3776.1 0.71 -0.1 3,651,069 + Xcc-8004.3776.1 0.83 +1.6 3,651,154 - +0.5 3,651,154 - -0.5 3,651,442 + -1.6 3,651,443 - -1.1 3,651,605 - +2.2 3,651,651 + +0.9 3,651,651 + +0.6 3,651,651 + -1.1 3,651,651 + -0.4 3,651,652 - -1.2 3,651,821 - Xcc-8004.3777.1 0.19 -1.2 3,651,855 - Xcc-8004.3777.1 0.21 +0.2 3,651,855 - Xcc-8004.3777.1 0.21 +0.3 3,651,992 + Xcc-8004.3777.1 0.30 -0.2 3,651,992 + Xcc-8004.3777.1 0.30 -0.1 3,652,012 + Xcc-8004.3777.1 0.31 +0.5 3,652,049 + Xcc-8004.3777.1 0.33 -0.7 3,652,049 + Xcc-8004.3777.1 0.33 +0.9 3,652,049 + Xcc-8004.3777.1 0.33 +1.4 3,652,049 + Xcc-8004.3777.1 0.33 +0.5 3,652,049 + Xcc-8004.3777.1 0.33 +0.4 3,652,050 - Xcc-8004.3777.1 0.33 +1.9 3,652,050 - Xcc-8004.3777.1 0.33 +0.4 3,652,050 - Xcc-8004.3777.1 0.33 -0.9 3,652,050 - Xcc-8004.3777.1 0.33 +0.1 3,652,182 - Xcc-8004.3777.1 0.42 +0.9 3,652,182 - Xcc-8004.3777.1 0.42 +0.4 3,652,196 + Xcc-8004.3777.1 0.43 -1.0 3,652,340 + Xcc-8004.3777.1 0.52 -1.0 3,652,340 + Xcc-8004.3777.1 0.52 -0.6 3,652,341 - Xcc-8004.3777.1 0.52 -0.9 3,652,341 - Xcc-8004.3777.1 0.52 +0.2 3,652,341 - Xcc-8004.3777.1 0.52 +1.2 3,652,343 + Xcc-8004.3777.1 0.52 -0.1 3,652,343 + Xcc-8004.3777.1 0.52 -0.3 3,652,344 - Xcc-8004.3777.1 0.52 +1.5 3,652,344 - Xcc-8004.3777.1 0.52 +0.1 3,652,344 - Xcc-8004.3777.1 0.52 +0.3 3,652,527 - Xcc-8004.3777.1 0.63 +0.9 3,652,724 + Xcc-8004.3777.1 0.76 -0.1 3,652,724 + Xcc-8004.3777.1 0.76 -0.5 3,652,725 - Xcc-8004.3777.1 0.76 +1.5 3,652,725 - Xcc-8004.3777.1 0.76 +0.7 3,652,725 - Xcc-8004.3777.1 0.76 -0.5 3,652,731 + Xcc-8004.3777.1 0.76 -1.1 3,652,731 + Xcc-8004.3777.1 0.76 -0.1 3,652,732 - Xcc-8004.3777.1 0.76 -0.7 3,652,742 + Xcc-8004.3777.1 0.77 +0.6 3,652,865 + Xcc-8004.3777.1 0.85 -0.7 3,652,865 + Xcc-8004.3777.1 0.85 -0.2 3,652,865 + Xcc-8004.3777.1 0.85 +0.9 3,652,865 + Xcc-8004.3777.1 0.85 -0.6 3,652,865 + Xcc-8004.3777.1 0.85 -1.5 3,652,865 + Xcc-8004.3777.1 0.85 -0.3 3,652,865 + Xcc-8004.3777.1 0.85 -0.7 3,652,865 + Xcc-8004.3777.1 0.85 +0.7 3,652,865 + Xcc-8004.3777.1 0.85 +1.2 3,652,866 - Xcc-8004.3777.1 0.85 +0.7 3,652,866 - Xcc-8004.3777.1 0.85 -0.3 3,652,866 - Xcc-8004.3777.1 0.85 +0.2 3,652,866 - Xcc-8004.3777.1 0.85 -0.7 3,652,866 - Xcc-8004.3777.1 0.85 -1.3 3,652,866 - Xcc-8004.3777.1 0.85 +1.1 3,653,097 + -0.1 3,653,097 + -0.2 3,653,097 + +1.0 3,653,098 - -1.3 3,653,098 - +0.2 3,653,098 - +0.3 3,653,132 - -0.1 3,653,429 + Xcc-8004.3778.1 0.17 +0.3 3,653,516 + Xcc-8004.3778.1 0.26 -0.1 3,653,517 - Xcc-8004.3778.1 0.26 -0.8 3,653,517 - Xcc-8004.3778.1 0.26 +0.2 3,653,664 - Xcc-8004.3778.1 0.41 +0.2 3,653,664 - Xcc-8004.3778.1 0.41 -0.7 3,653,705 + Xcc-8004.3778.1 0.45 +0.7 3,653,705 + Xcc-8004.3778.1 0.45 -1.0 3,653,705 + Xcc-8004.3778.1 0.45 +0.5 3,653,751 - Xcc-8004.3778.1 0.49 -0.1 3,653,751 - Xcc-8004.3778.1 0.49 -0.7 3,653,751 - Xcc-8004.3778.1 0.49 +0.9 3,653,768 - Xcc-8004.3778.1 0.51 +2.2 3,653,909 + Xcc-8004.3778.1 0.65 -0.7 3,654,068 + Xcc-8004.3778.1 0.81 -0.3 3,654,068 + Xcc-8004.3778.1 0.81 +0.2 3,654,068 + Xcc-8004.3778.1 0.81 -0.9 3,654,069 - Xcc-8004.3778.1 0.81 -1.1
Or see this region's nucleotide sequence