Experiment: Supernatant; Xanthomonas campestris pv. campestris (strain 8004) grown in 0.1x TSB, 0.4x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.3557.1 and Xcc-8004.3558.1 are separated by 236 nucleotides Xcc-8004.3558.1 and Xcc-8004.3559.1 are separated by 2 nucleotides Xcc-8004.3559.1 and Xcc-8004.3560.1 overlap by 4 nucleotides Xcc-8004.3560.1 and Xcc-8004.3561.1 are separated by 2 nucleotides
Xcc-8004.3557.1: Xcc-8004.3557.1 - Uridine monophosphate kinase (EC 2.7.4.22), at 3,447,619 to 3,448,341
Xcc-8004.3557.1
Xcc-8004.3558.1: Xcc-8004.3558.1 - Ribosome recycling factor, at 3,448,578 to 3,449,135
Xcc-8004.3558.1
Xcc-8004.3559.1: Xcc-8004.3559.1 - Undecaprenyl diphosphate synthase (EC 2.5.1.31), at 3,449,138 to 3,449,914
Xcc-8004.3559.1
Xcc-8004.3560.1: Xcc-8004.3560.1 - Phosphatidate cytidylyltransferase (EC 2.7.7.41), at 3,449,911 to 3,450,738
Xcc-8004.3560.1
Xcc-8004.3561.1: Xcc-8004.3561.1 - 1-deoxy-D-xylulose 5-phosphate reductoisomerase (EC 1.1.1.267), at 3,450,741 to 3,451,931
Xcc-8004.3561.1
Position (kb)
3449
3450 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3448.325 kb on + strand at 3448.540 kb on + strand at 3448.540 kb on + strand at 3448.540 kb on + strand at 3448.540 kb on + strand at 3448.540 kb on + strand at 3448.540 kb on + strand at 3448.541 kb on - strand at 3448.541 kb on - strand at 3448.541 kb on - strand at 3448.542 kb on + strand at 3448.542 kb on + strand at 3448.542 kb on + strand at 3448.554 kb on + strand at 3448.554 kb on + strand at 3450.736 kb on + strand at 3450.736 kb on + strand at 3450.736 kb on + strand at 3450.736 kb on + strand at 3450.736 kb on + strand at 3450.736 kb on + strand at 3450.736 kb on + strand at 3450.737 kb on - strand at 3450.737 kb on - strand at 3450.737 kb on - strand at 3450.737 kb on - strand at 3450.737 kb on - strand at 3450.737 kb on - strand at 3450.737 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Xanthomonas campestris pv. campestris (strain 8004) grown in 0.1x TSB, 0.4x remove 3,448,325 + +0.0 3,448,540 + +0.3 3,448,540 + -0.2 3,448,540 + -0.2 3,448,540 + -0.0 3,448,540 + -0.7 3,448,540 + -0.5 3,448,541 - -1.5 3,448,541 - -2.5 3,448,541 - -1.5 3,448,542 + +0.9 3,448,542 + -0.3 3,448,542 + -0.6 3,448,554 + +0.2 3,448,554 + +0.2 3,450,736 + -0.7 3,450,736 + +0.9 3,450,736 + +1.9 3,450,736 + -1.5 3,450,736 + -0.0 3,450,736 + +1.0 3,450,736 + +0.2 3,450,737 - -0.0 3,450,737 - +0.3 3,450,737 - -1.0 3,450,737 - -2.4 3,450,737 - -0.4 3,450,737 - +0.5 3,450,737 - +0.0
Or see this region's nucleotide sequence