Experiment: Supernatant; Xanthomonas campestris pv. campestris (strain 8004) grown in 0.1x TSB, 0.4x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.1260.1 and Xcc-8004.1261.1 are separated by 262 nucleotides Xcc-8004.1261.1 and Xcc-8004.1262.1 overlap by 4 nucleotides
Xcc-8004.1260.1: Xcc-8004.1260.1 - Sulfate adenylyltransferase subunit 1 (EC 2.7.7.4) / Adenylylsulfate kinase (EC 2.7.1.25), at 1,193,638 to 1,195,614
Xcc-8004.1260.1
Xcc-8004.1261.1: Xcc-8004.1261.1 - Membrane fusion protein of RND family multidrug efflux pump, at 1,195,877 to 1,196,962
Xcc-8004.1261.1
Xcc-8004.1262.1: Xcc-8004.1262.1 - RND multidrug efflux transporter; Acriflavin resistance protein, at 1,196,959 to 1,200,084
Xcc-8004.1262.1
Position (kb) 1195
1196
1197 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1194.892 kb on + strand, within Xcc-8004.1260.1 at 1194.893 kb on - strand, within Xcc-8004.1260.1 at 1194.893 kb on - strand, within Xcc-8004.1260.1 at 1194.934 kb on + strand, within Xcc-8004.1260.1 at 1195.186 kb on + strand, within Xcc-8004.1260.1 at 1195.187 kb on - strand, within Xcc-8004.1260.1 at 1195.187 kb on - strand, within Xcc-8004.1260.1 at 1195.459 kb on + strand at 1195.513 kb on + strand at 1195.514 kb on - strand at 1195.565 kb on + strand at 1195.565 kb on + strand at 1195.566 kb on - strand at 1195.566 kb on - strand at 1195.566 kb on - strand at 1195.566 kb on - strand at 1195.594 kb on + strand at 1195.595 kb on - strand at 1195.595 kb on - strand at 1195.595 kb on - strand at 1195.636 kb on + strand at 1195.684 kb on + strand at 1195.684 kb on + strand at 1195.684 kb on + strand at 1195.684 kb on + strand at 1195.684 kb on + strand at 1195.685 kb on - strand at 1195.692 kb on + strand at 1195.844 kb on + strand at 1195.845 kb on - strand at 1195.858 kb on - strand at 1195.858 kb on - strand at 1196.223 kb on - strand, within Xcc-8004.1261.1 at 1196.456 kb on + strand, within Xcc-8004.1261.1 at 1196.456 kb on + strand, within Xcc-8004.1261.1 at 1196.456 kb on + strand, within Xcc-8004.1261.1 at 1196.456 kb on + strand, within Xcc-8004.1261.1 at 1196.456 kb on + strand, within Xcc-8004.1261.1 at 1196.456 kb on + strand, within Xcc-8004.1261.1 at 1196.456 kb on + strand, within Xcc-8004.1261.1 at 1196.456 kb on + strand, within Xcc-8004.1261.1 at 1196.456 kb on + strand, within Xcc-8004.1261.1 at 1196.456 kb on + strand, within Xcc-8004.1261.1 at 1196.457 kb on - strand, within Xcc-8004.1261.1 at 1196.457 kb on - strand, within Xcc-8004.1261.1 at 1196.457 kb on - strand, within Xcc-8004.1261.1 at 1196.457 kb on - strand, within Xcc-8004.1261.1 at 1196.457 kb on - strand, within Xcc-8004.1261.1 at 1196.457 kb on - strand, within Xcc-8004.1261.1 at 1196.457 kb on - strand, within Xcc-8004.1261.1 at 1196.457 kb on - strand, within Xcc-8004.1261.1 at 1196.457 kb on - strand, within Xcc-8004.1261.1 at 1196.457 kb on - strand, within Xcc-8004.1261.1 at 1196.741 kb on + strand, within Xcc-8004.1261.1 at 1196.741 kb on + strand, within Xcc-8004.1261.1 at 1196.741 kb on + strand, within Xcc-8004.1261.1 at 1196.741 kb on + strand, within Xcc-8004.1261.1 at 1196.741 kb on + strand, within Xcc-8004.1261.1 at 1196.741 kb on + strand, within Xcc-8004.1261.1 at 1196.741 kb on + strand, within Xcc-8004.1261.1 at 1196.741 kb on + strand, within Xcc-8004.1261.1 at 1196.741 kb on + strand, within Xcc-8004.1261.1 at 1196.742 kb on - strand, within Xcc-8004.1261.1 at 1196.742 kb on - strand, within Xcc-8004.1261.1 at 1196.742 kb on - strand, within Xcc-8004.1261.1 at 1196.742 kb on - strand, within Xcc-8004.1261.1 at 1196.742 kb on - strand, within Xcc-8004.1261.1 at 1197.109 kb on + strand at 1197.110 kb on - strand at 1197.110 kb on - strand at 1197.110 kb on - strand at 1197.436 kb on + strand, within Xcc-8004.1262.1 at 1197.436 kb on + strand, within Xcc-8004.1262.1 at 1197.658 kb on + strand, within Xcc-8004.1262.1 at 1197.659 kb on - strand, within Xcc-8004.1262.1 at 1197.712 kb on + strand, within Xcc-8004.1262.1 at 1197.713 kb on - strand, within Xcc-8004.1262.1 at 1197.845 kb on + strand, within Xcc-8004.1262.1 at 1197.846 kb on - strand, within Xcc-8004.1262.1 at 1197.846 kb on - strand, within Xcc-8004.1262.1 at 1197.962 kb on - strand, within Xcc-8004.1262.1
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Xanthomonas campestris pv. campestris (strain 8004) grown in 0.1x TSB, 0.4x remove 1,194,892 + Xcc-8004.1260.1 0.63 +0.5 1,194,893 - Xcc-8004.1260.1 0.63 -1.1 1,194,893 - Xcc-8004.1260.1 0.63 +0.2 1,194,934 + Xcc-8004.1260.1 0.66 -0.3 1,195,186 + Xcc-8004.1260.1 0.78 -0.1 1,195,187 - Xcc-8004.1260.1 0.78 -0.8 1,195,187 - Xcc-8004.1260.1 0.78 +0.4 1,195,459 + +0.7 1,195,513 + +0.8 1,195,514 - +0.5 1,195,565 + +1.2 1,195,565 + -0.9 1,195,566 - -0.0 1,195,566 - -0.4 1,195,566 - +2.1 1,195,566 - +0.5 1,195,594 + -1.2 1,195,595 - -0.5 1,195,595 - +0.7 1,195,595 - +1.7 1,195,636 + -1.5 1,195,684 + +0.9 1,195,684 + -1.1 1,195,684 + +0.4 1,195,684 + +1.3 1,195,684 + -0.6 1,195,685 - -2.7 1,195,692 + -1.4 1,195,844 + +1.2 1,195,845 - -0.5 1,195,858 - -0.8 1,195,858 - -1.1 1,196,223 - Xcc-8004.1261.1 0.32 +0.9 1,196,456 + Xcc-8004.1261.1 0.53 +0.7 1,196,456 + Xcc-8004.1261.1 0.53 -0.7 1,196,456 + Xcc-8004.1261.1 0.53 -0.1 1,196,456 + Xcc-8004.1261.1 0.53 +0.9 1,196,456 + Xcc-8004.1261.1 0.53 +0.1 1,196,456 + Xcc-8004.1261.1 0.53 -1.3 1,196,456 + Xcc-8004.1261.1 0.53 +1.1 1,196,456 + Xcc-8004.1261.1 0.53 +0.1 1,196,456 + Xcc-8004.1261.1 0.53 -0.7 1,196,456 + Xcc-8004.1261.1 0.53 +0.8 1,196,457 - Xcc-8004.1261.1 0.53 -1.9 1,196,457 - Xcc-8004.1261.1 0.53 +0.4 1,196,457 - Xcc-8004.1261.1 0.53 +1.1 1,196,457 - Xcc-8004.1261.1 0.53 +1.2 1,196,457 - Xcc-8004.1261.1 0.53 +0.4 1,196,457 - Xcc-8004.1261.1 0.53 +0.4 1,196,457 - Xcc-8004.1261.1 0.53 +1.2 1,196,457 - Xcc-8004.1261.1 0.53 +0.1 1,196,457 - Xcc-8004.1261.1 0.53 +1.2 1,196,457 - Xcc-8004.1261.1 0.53 -0.7 1,196,741 + Xcc-8004.1261.1 0.80 +1.0 1,196,741 + Xcc-8004.1261.1 0.80 +0.7 1,196,741 + Xcc-8004.1261.1 0.80 +1.1 1,196,741 + Xcc-8004.1261.1 0.80 -0.7 1,196,741 + Xcc-8004.1261.1 0.80 -0.3 1,196,741 + Xcc-8004.1261.1 0.80 -0.5 1,196,741 + Xcc-8004.1261.1 0.80 -0.2 1,196,741 + Xcc-8004.1261.1 0.80 +0.0 1,196,741 + Xcc-8004.1261.1 0.80 -0.5 1,196,742 - Xcc-8004.1261.1 0.80 +1.7 1,196,742 - Xcc-8004.1261.1 0.80 +0.3 1,196,742 - Xcc-8004.1261.1 0.80 +0.2 1,196,742 - Xcc-8004.1261.1 0.80 +0.1 1,196,742 - Xcc-8004.1261.1 0.80 +0.8 1,197,109 + -0.3 1,197,110 - -0.5 1,197,110 - +0.0 1,197,110 - +1.0 1,197,436 + Xcc-8004.1262.1 0.15 -0.9 1,197,436 + Xcc-8004.1262.1 0.15 -0.4 1,197,658 + Xcc-8004.1262.1 0.22 +1.4 1,197,659 - Xcc-8004.1262.1 0.22 +1.1 1,197,712 + Xcc-8004.1262.1 0.24 +1.1 1,197,713 - Xcc-8004.1262.1 0.24 +0.5 1,197,845 + Xcc-8004.1262.1 0.28 +0.6 1,197,846 - Xcc-8004.1262.1 0.28 -0.9 1,197,846 - Xcc-8004.1262.1 0.28 +1.3 1,197,962 - Xcc-8004.1262.1 0.32 +0.2
Or see this region's nucleotide sequence