Experiment: Aluminum chloride 0.078125 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt rpoD3 and mutT overlap by 1 nucleotides mutT and hemF are separated by 415 nucleotides
Synpcc7942_0672: rpoD3 - RNA polymerase sigma factor SigD, at 666,887 to 667,849
rpoD3
Synpcc7942_0673: mutT - A/G-specific DNA-adenine glycosylase, at 667,849 to 668,931
mutT
Synpcc7942_0674: hemF - coproporphyrinogen III oxidase, at 669,347 to 670,300
hemF
Position (kb) 667
668
669 Strain fitness (log2 ratio) -2
-1
0
1
2 at 666.872 kb on + strand at 666.910 kb on + strand at 666.920 kb on + strand at 666.924 kb on + strand at 666.924 kb on + strand at 666.924 kb on + strand at 666.956 kb on + strand at 666.964 kb on - strand at 666.971 kb on + strand at 666.993 kb on + strand, within rpoD3 at 667.000 kb on + strand, within rpoD3 at 667.038 kb on + strand, within rpoD3 at 667.046 kb on - strand, within rpoD3 at 667.046 kb on - strand, within rpoD3 at 667.046 kb on - strand, within rpoD3 at 667.072 kb on + strand, within rpoD3 at 667.106 kb on + strand, within rpoD3 at 667.115 kb on + strand, within rpoD3 at 667.123 kb on + strand, within rpoD3 at 667.178 kb on - strand, within rpoD3 at 667.245 kb on + strand, within rpoD3 at 667.253 kb on - strand, within rpoD3 at 667.370 kb on - strand at 667.385 kb on + strand, within rpoD3 at 667.479 kb on + strand, within rpoD3 at 667.485 kb on + strand, within rpoD3 at 667.485 kb on + strand, within rpoD3 at 667.485 kb on - strand, within rpoD3 at 667.488 kb on + strand, within rpoD3 at 667.493 kb on - strand, within rpoD3 at 667.704 kb on + strand, within rpoD3 at 667.704 kb on + strand, within rpoD3 at 667.704 kb on + strand, within rpoD3 at 667.704 kb on - strand, within rpoD3 at 667.704 kb on - strand, within rpoD3 at 667.706 kb on + strand, within rpoD3 at 667.712 kb on - strand, within rpoD3 at 667.721 kb on + strand, within rpoD3 at 667.729 kb on - strand, within rpoD3 at 667.729 kb on - strand, within rpoD3 at 667.772 kb on - strand at 667.797 kb on + strand at 667.803 kb on - strand at 667.805 kb on - strand at 667.805 kb on - strand at 667.805 kb on - strand at 667.868 kb on + strand at 667.868 kb on + strand at 667.868 kb on + strand at 667.868 kb on + strand at 667.876 kb on - strand at 667.876 kb on - strand at 667.876 kb on - strand at 667.888 kb on + strand at 667.893 kb on + strand at 667.906 kb on + strand at 667.921 kb on - strand at 667.923 kb on + strand at 667.944 kb on + strand at 667.944 kb on + strand at 667.952 kb on - strand at 667.952 kb on - strand at 667.967 kb on + strand, within mutT at 668.016 kb on + strand, within mutT at 668.016 kb on + strand, within mutT at 668.024 kb on - strand, within mutT at 668.024 kb on - strand, within mutT at 668.039 kb on + strand, within mutT at 668.039 kb on + strand, within mutT at 668.047 kb on - strand, within mutT at 668.047 kb on - strand, within mutT at 668.049 kb on - strand, within mutT at 668.055 kb on - strand, within mutT at 668.062 kb on + strand, within mutT at 668.084 kb on - strand, within mutT at 668.092 kb on + strand, within mutT at 668.092 kb on + strand, within mutT at 668.092 kb on + strand, within mutT at 668.110 kb on - strand, within mutT at 668.111 kb on - strand, within mutT at 668.118 kb on + strand, within mutT at 668.119 kb on + strand, within mutT at 668.142 kb on - strand, within mutT at 668.150 kb on - strand, within mutT at 668.163 kb on - strand, within mutT at 668.207 kb on - strand, within mutT at 668.217 kb on - strand, within mutT at 668.219 kb on - strand, within mutT at 668.250 kb on - strand, within mutT at 668.305 kb on + strand, within mutT at 668.313 kb on - strand, within mutT at 668.340 kb on + strand, within mutT at 668.351 kb on + strand, within mutT at 668.351 kb on + strand, within mutT at 668.359 kb on - strand, within mutT at 668.359 kb on - strand, within mutT at 668.364 kb on + strand, within mutT at 668.369 kb on + strand, within mutT at 668.382 kb on - strand, within mutT at 668.387 kb on + strand, within mutT at 668.401 kb on + strand, within mutT at 668.405 kb on - strand, within mutT at 668.409 kb on - strand, within mutT at 668.433 kb on + strand, within mutT at 668.441 kb on - strand at 668.441 kb on - strand, within mutT at 668.441 kb on - strand, within mutT at 668.443 kb on - strand, within mutT at 668.487 kb on - strand, within mutT at 668.496 kb on - strand, within mutT at 668.517 kb on - strand, within mutT at 668.536 kb on - strand, within mutT at 668.591 kb on - strand, within mutT at 668.649 kb on + strand, within mutT at 668.666 kb on + strand, within mutT at 668.667 kb on - strand, within mutT at 668.761 kb on - strand, within mutT at 668.910 kb on + strand at 669.114 kb on - strand at 669.116 kb on + strand at 669.116 kb on + strand at 669.116 kb on + strand at 669.276 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Aluminum chloride 0.078125 mM remove 666,872 + +0.4 666,910 + +2.2 666,920 + +0.1 666,924 + +0.4 666,924 + -0.9 666,924 + -0.7 666,956 + -0.1 666,964 - -1.1 666,971 + +0.5 666,993 + rpoD3 Synpcc7942_0672 0.11 +1.1 667,000 + rpoD3 Synpcc7942_0672 0.12 +0.1 667,038 + rpoD3 Synpcc7942_0672 0.16 +0.8 667,046 - rpoD3 Synpcc7942_0672 0.17 +0.5 667,046 - rpoD3 Synpcc7942_0672 0.17 +0.9 667,046 - rpoD3 Synpcc7942_0672 0.17 -0.6 667,072 + rpoD3 Synpcc7942_0672 0.19 -1.5 667,106 + rpoD3 Synpcc7942_0672 0.23 -0.4 667,115 + rpoD3 Synpcc7942_0672 0.24 +0.5 667,123 + rpoD3 Synpcc7942_0672 0.25 +0.8 667,178 - rpoD3 Synpcc7942_0672 0.30 +0.7 667,245 + rpoD3 Synpcc7942_0672 0.37 +0.4 667,253 - rpoD3 Synpcc7942_0672 0.38 +1.7 667,370 - +1.5 667,385 + rpoD3 Synpcc7942_0672 0.52 -1.1 667,479 + rpoD3 Synpcc7942_0672 0.61 +0.2 667,485 + rpoD3 Synpcc7942_0672 0.62 -0.6 667,485 + rpoD3 Synpcc7942_0672 0.62 -0.4 667,485 - rpoD3 Synpcc7942_0672 0.62 -2.5 667,488 + rpoD3 Synpcc7942_0672 0.62 -0.5 667,493 - rpoD3 Synpcc7942_0672 0.63 +0.9 667,704 + rpoD3 Synpcc7942_0672 0.85 +1.2 667,704 + rpoD3 Synpcc7942_0672 0.85 -0.6 667,704 + rpoD3 Synpcc7942_0672 0.85 -0.9 667,704 - rpoD3 Synpcc7942_0672 0.85 -2.1 667,704 - rpoD3 Synpcc7942_0672 0.85 -1.1 667,706 + rpoD3 Synpcc7942_0672 0.85 -0.1 667,712 - rpoD3 Synpcc7942_0672 0.86 -0.1 667,721 + rpoD3 Synpcc7942_0672 0.87 +0.6 667,729 - rpoD3 Synpcc7942_0672 0.87 +1.0 667,729 - rpoD3 Synpcc7942_0672 0.87 -0.2 667,772 - -0.1 667,797 + -0.5 667,803 - -0.8 667,805 - -0.3 667,805 - +0.5 667,805 - +1.1 667,868 + -0.9 667,868 + -2.0 667,868 + -0.1 667,868 + +0.1 667,876 - -0.1 667,876 - +0.7 667,876 - -0.9 667,888 + -0.1 667,893 + +0.3 667,906 + -2.7 667,921 - +1.3 667,923 + +0.7 667,944 + +0.7 667,944 + +0.2 667,952 - -0.5 667,952 - -1.7 667,967 + mutT Synpcc7942_0673 0.11 -1.1 668,016 + mutT Synpcc7942_0673 0.15 -1.7 668,016 + mutT Synpcc7942_0673 0.15 +0.8 668,024 - mutT Synpcc7942_0673 0.16 -0.4 668,024 - mutT Synpcc7942_0673 0.16 -0.7 668,039 + mutT Synpcc7942_0673 0.18 -1.1 668,039 + mutT Synpcc7942_0673 0.18 +1.1 668,047 - mutT Synpcc7942_0673 0.18 -0.3 668,047 - mutT Synpcc7942_0673 0.18 -0.2 668,049 - mutT Synpcc7942_0673 0.18 +0.4 668,055 - mutT Synpcc7942_0673 0.19 -0.1 668,062 + mutT Synpcc7942_0673 0.20 +0.2 668,084 - mutT Synpcc7942_0673 0.22 -0.9 668,092 + mutT Synpcc7942_0673 0.22 +1.5 668,092 + mutT Synpcc7942_0673 0.22 -0.5 668,092 + mutT Synpcc7942_0673 0.22 -0.1 668,110 - mutT Synpcc7942_0673 0.24 -1.1 668,111 - mutT Synpcc7942_0673 0.24 -0.8 668,118 + mutT Synpcc7942_0673 0.25 +0.5 668,119 + mutT Synpcc7942_0673 0.25 +0.5 668,142 - mutT Synpcc7942_0673 0.27 +0.2 668,150 - mutT Synpcc7942_0673 0.28 -1.5 668,163 - mutT Synpcc7942_0673 0.29 -0.1 668,207 - mutT Synpcc7942_0673 0.33 -0.8 668,217 - mutT Synpcc7942_0673 0.34 -0.5 668,219 - mutT Synpcc7942_0673 0.34 -0.5 668,250 - mutT Synpcc7942_0673 0.37 -0.0 668,305 + mutT Synpcc7942_0673 0.42 +0.6 668,313 - mutT Synpcc7942_0673 0.43 -2.3 668,340 + mutT Synpcc7942_0673 0.45 -1.9 668,351 + mutT Synpcc7942_0673 0.46 +0.5 668,351 + mutT Synpcc7942_0673 0.46 +0.3 668,359 - mutT Synpcc7942_0673 0.47 -0.2 668,359 - mutT Synpcc7942_0673 0.47 -0.7 668,364 + mutT Synpcc7942_0673 0.48 -0.5 668,369 + mutT Synpcc7942_0673 0.48 -1.1 668,382 - mutT Synpcc7942_0673 0.49 +0.3 668,387 + mutT Synpcc7942_0673 0.50 -0.8 668,401 + mutT Synpcc7942_0673 0.51 +0.2 668,405 - mutT Synpcc7942_0673 0.51 +0.3 668,409 - mutT Synpcc7942_0673 0.52 +1.1 668,433 + mutT Synpcc7942_0673 0.54 +1.6 668,441 - -0.1 668,441 - mutT Synpcc7942_0673 0.55 +0.9 668,441 - mutT Synpcc7942_0673 0.55 -0.3 668,443 - mutT Synpcc7942_0673 0.55 +0.8 668,487 - mutT Synpcc7942_0673 0.59 -1.4 668,496 - mutT Synpcc7942_0673 0.60 -0.5 668,517 - mutT Synpcc7942_0673 0.62 -1.7 668,536 - mutT Synpcc7942_0673 0.63 +1.2 668,591 - mutT Synpcc7942_0673 0.69 +0.7 668,649 + mutT Synpcc7942_0673 0.74 +1.6 668,666 + mutT Synpcc7942_0673 0.75 -0.5 668,667 - mutT Synpcc7942_0673 0.76 -0.4 668,761 - mutT Synpcc7942_0673 0.84 +0.9 668,910 + -0.1 669,114 - +0.0 669,116 + -0.1 669,116 + +0.4 669,116 + -0.5 669,276 - +0.6
Or see this region's nucleotide sequence