Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS36270 and RR42_RS36275 are separated by 414 nucleotides RR42_RS36275 and RR42_RS36280 overlap by 4 nucleotides
RR42_RS36270: RR42_RS36270 - patatin, at 3,587,608 to 3,589,935
_RS36270
RR42_RS36275: RR42_RS36275 - ABC transporter substrate-binding protein, at 3,590,350 to 3,591,348
_RS36275
RR42_RS36280: RR42_RS36280 - hypothetical protein, at 3,591,345 to 3,592,685
_RS36280
Position (kb)
3590
3591
3592 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 3589.637 kb on + strand, within RR42_RS36270 at 3589.733 kb on + strand at 3589.990 kb on + strand at 3590.129 kb on - strand at 3590.143 kb on + strand at 3590.252 kb on + strand at 3590.252 kb on + strand at 3590.253 kb on - strand at 3590.253 kb on - strand at 3590.253 kb on - strand at 3590.253 kb on - strand at 3590.262 kb on - strand at 3590.351 kb on + strand at 3590.594 kb on + strand, within RR42_RS36275 at 3590.700 kb on + strand, within RR42_RS36275 at 3590.719 kb on - strand, within RR42_RS36275 at 3590.719 kb on - strand, within RR42_RS36275 at 3590.772 kb on - strand, within RR42_RS36275 at 3590.878 kb on - strand, within RR42_RS36275 at 3590.944 kb on + strand, within RR42_RS36275 at 3590.945 kb on - strand, within RR42_RS36275 at 3590.996 kb on + strand, within RR42_RS36275 at 3591.060 kb on - strand, within RR42_RS36275 at 3591.147 kb on - strand, within RR42_RS36275 at 3591.440 kb on - strand at 3591.634 kb on + strand, within RR42_RS36280 at 3591.634 kb on + strand, within RR42_RS36280 at 3591.634 kb on + strand, within RR42_RS36280 at 3591.634 kb on + strand, within RR42_RS36280 at 3591.634 kb on + strand, within RR42_RS36280 at 3591.752 kb on - strand, within RR42_RS36280 at 3591.752 kb on - strand, within RR42_RS36280 at 3591.752 kb on - strand, within RR42_RS36280 at 3591.784 kb on + strand, within RR42_RS36280 at 3591.784 kb on + strand, within RR42_RS36280 at 3591.784 kb on + strand, within RR42_RS36280 at 3591.785 kb on - strand, within RR42_RS36280 at 3592.339 kb on + strand, within RR42_RS36280 at 3592.340 kb on - strand, within RR42_RS36280 at 3592.340 kb on - strand, within RR42_RS36280
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 3,589,637 + RR42_RS36270 0.87 -0.0 3,589,733 + +2.2 3,589,990 + +0.4 3,590,129 - +0.2 3,590,143 + -1.2 3,590,252 + +0.1 3,590,252 + -0.8 3,590,253 - +2.1 3,590,253 - +2.1 3,590,253 - +1.1 3,590,253 - +0.5 3,590,262 - -0.1 3,590,351 + +0.7 3,590,594 + RR42_RS36275 0.24 +2.5 3,590,700 + RR42_RS36275 0.35 +3.6 3,590,719 - RR42_RS36275 0.37 -1.6 3,590,719 - RR42_RS36275 0.37 -1.7 3,590,772 - RR42_RS36275 0.42 +0.9 3,590,878 - RR42_RS36275 0.53 -1.4 3,590,944 + RR42_RS36275 0.59 +0.2 3,590,945 - RR42_RS36275 0.60 -0.1 3,590,996 + RR42_RS36275 0.65 -3.8 3,591,060 - RR42_RS36275 0.71 +1.5 3,591,147 - RR42_RS36275 0.80 -3.0 3,591,440 - +1.8 3,591,634 + RR42_RS36280 0.22 -0.6 3,591,634 + RR42_RS36280 0.22 +0.4 3,591,634 + RR42_RS36280 0.22 +0.6 3,591,634 + RR42_RS36280 0.22 +1.1 3,591,634 + RR42_RS36280 0.22 +3.2 3,591,752 - RR42_RS36280 0.30 +0.9 3,591,752 - RR42_RS36280 0.30 -3.5 3,591,752 - RR42_RS36280 0.30 -0.8 3,591,784 + RR42_RS36280 0.33 +0.6 3,591,784 + RR42_RS36280 0.33 +0.7 3,591,784 + RR42_RS36280 0.33 -1.6 3,591,785 - RR42_RS36280 0.33 +0.2 3,592,339 + RR42_RS36280 0.74 +0.3 3,592,340 - RR42_RS36280 0.74 -0.0 3,592,340 - RR42_RS36280 0.74 -2.1
Or see this region's nucleotide sequence