Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS36230

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS36225 and RR42_RS36230 are separated by 217 nucleotidesRR42_RS36230 and RR42_RS36235 are separated by 44 nucleotidesRR42_RS36235 and RR42_RS36240 overlap by 4 nucleotides RR42_RS36225: RR42_RS36225 - (2Fe-2S)-binding protein, at 3,576,726 to 3,577,763 _RS36225 RR42_RS36230: RR42_RS36230 - nitrate ABC transporter ATPase, at 3,577,981 to 3,578,724 _RS36230 RR42_RS36235: RR42_RS36235 - ABC transporter ATP-binding protein, at 3,578,769 to 3,579,563 _RS36235 RR42_RS36240: RR42_RS36240 - amidohydrolase, at 3,579,560 to 3,581,029 _RS36240 Position (kb) 3577 3578 3579Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3577.041 kb on + strand, within RR42_RS36225at 3577.041 kb on + strand, within RR42_RS36225at 3577.042 kb on - strand, within RR42_RS36225at 3577.059 kb on + strand, within RR42_RS36225at 3577.059 kb on + strand, within RR42_RS36225at 3577.060 kb on - strand, within RR42_RS36225at 3577.060 kb on - strand, within RR42_RS36225at 3577.060 kb on - strand, within RR42_RS36225at 3577.065 kb on + strand, within RR42_RS36225at 3577.272 kb on + strand, within RR42_RS36225at 3577.273 kb on - strand, within RR42_RS36225at 3577.273 kb on - strand, within RR42_RS36225at 3577.385 kb on + strand, within RR42_RS36225at 3577.386 kb on - strand, within RR42_RS36225at 3577.434 kb on + strand, within RR42_RS36225at 3577.435 kb on - strand, within RR42_RS36225at 3577.464 kb on + strand, within RR42_RS36225at 3577.618 kb on - strand, within RR42_RS36225at 3577.618 kb on - strand, within RR42_RS36225at 3577.830 kb on + strandat 3577.830 kb on + strandat 3578.104 kb on - strand, within RR42_RS36230at 3578.104 kb on - strand, within RR42_RS36230at 3578.104 kb on - strand, within RR42_RS36230at 3578.527 kb on + strand, within RR42_RS36230at 3578.527 kb on + strand, within RR42_RS36230at 3578.527 kb on + strand, within RR42_RS36230at 3578.528 kb on - strand, within RR42_RS36230at 3578.528 kb on - strand, within RR42_RS36230at 3578.528 kb on - strand, within RR42_RS36230at 3578.528 kb on - strand, within RR42_RS36230at 3578.540 kb on - strand, within RR42_RS36230at 3578.659 kb on + strandat 3578.722 kb on + strandat 3578.722 kb on + strandat 3578.782 kb on + strandat 3578.782 kb on + strandat 3578.887 kb on - strand, within RR42_RS36235at 3578.956 kb on + strand, within RR42_RS36235at 3579.069 kb on + strand, within RR42_RS36235at 3579.272 kb on + strand, within RR42_RS36235at 3579.310 kb on - strand, within RR42_RS36235at 3579.310 kb on - strand, within RR42_RS36235at 3579.310 kb on - strand, within RR42_RS36235at 3579.412 kb on - strand, within RR42_RS36235at 3579.412 kb on - strand, within RR42_RS36235

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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3,577,041 + RR42_RS36225 0.30 +0.3
3,577,041 + RR42_RS36225 0.30 +1.9
3,577,042 - RR42_RS36225 0.30 +0.8
3,577,059 + RR42_RS36225 0.32 -2.0
3,577,059 + RR42_RS36225 0.32 +0.3
3,577,060 - RR42_RS36225 0.32 -2.0
3,577,060 - RR42_RS36225 0.32 +1.2
3,577,060 - RR42_RS36225 0.32 +0.1
3,577,065 + RR42_RS36225 0.33 -0.1
3,577,272 + RR42_RS36225 0.53 +0.9
3,577,273 - RR42_RS36225 0.53 -0.2
3,577,273 - RR42_RS36225 0.53 -0.9
3,577,385 + RR42_RS36225 0.63 -2.5
3,577,386 - RR42_RS36225 0.64 -2.2
3,577,434 + RR42_RS36225 0.68 -0.0
3,577,435 - RR42_RS36225 0.68 -0.8
3,577,464 + RR42_RS36225 0.71 +0.5
3,577,618 - RR42_RS36225 0.86 -0.2
3,577,618 - RR42_RS36225 0.86 -3.7
3,577,830 + -0.6
3,577,830 + +1.1
3,578,104 - RR42_RS36230 0.17 -3.1
3,578,104 - RR42_RS36230 0.17 +1.2
3,578,104 - RR42_RS36230 0.17 +0.7
3,578,527 + RR42_RS36230 0.73 -0.3
3,578,527 + RR42_RS36230 0.73 -0.6
3,578,527 + RR42_RS36230 0.73 +0.0
3,578,528 - RR42_RS36230 0.74 +0.9
3,578,528 - RR42_RS36230 0.74 +0.2
3,578,528 - RR42_RS36230 0.74 -0.2
3,578,528 - RR42_RS36230 0.74 -0.1
3,578,540 - RR42_RS36230 0.75 +1.9
3,578,659 + -0.9
3,578,722 + -2.4
3,578,722 + -1.2
3,578,782 + +1.1
3,578,782 + -2.0
3,578,887 - RR42_RS36235 0.15 -1.9
3,578,956 + RR42_RS36235 0.24 +1.7
3,579,069 + RR42_RS36235 0.38 +0.9
3,579,272 + RR42_RS36235 0.63 +0.4
3,579,310 - RR42_RS36235 0.68 -2.1
3,579,310 - RR42_RS36235 0.68 +0.3
3,579,310 - RR42_RS36235 0.68 -0.1
3,579,412 - RR42_RS36235 0.81 +2.4
3,579,412 - RR42_RS36235 0.81 +0.7

Or see this region's nucleotide sequence