Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS35895

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
3,500,132	+		RR42_RS35890	0.30	+0.6
3,500,132	+		RR42_RS35890	0.30	-1.1
3,500,132	+		RR42_RS35890	0.30	+1.5
3,500,133	-		RR42_RS35890	0.30	+1.4
3,500,133	-		RR42_RS35890	0.30	+0.9
3,500,144	-		RR42_RS35890	0.31	-2.6
3,500,199	-		RR42_RS35890	0.37	+1.5
3,500,199	-		RR42_RS35890	0.37	+0.4
3,500,199	-		RR42_RS35890	0.37	+1.0
3,500,438	+		RR42_RS35890	0.60	-1.0
3,500,438	+		RR42_RS35890	0.60	-3.1
3,500,438	+		RR42_RS35890	0.60	+0.0
3,500,438	+		RR42_RS35890	0.60	+0.3
3,500,439	-		RR42_RS35890	0.61	-2.9
3,500,531	+		RR42_RS35890	0.70	+1.3
3,500,531	+		RR42_RS35890	0.70	+1.9
3,500,531	+		RR42_RS35890	0.70	+1.1
3,500,532	-		RR42_RS35890	0.70	+0.3
3,500,546	-		RR42_RS35890	0.71	+0.6
3,500,564	+		RR42_RS35890	0.73	+1.3
3,500,564	+		RR42_RS35890	0.73	-0.3
3,500,564	+		RR42_RS35890	0.73	-4.3
3,500,564	+		RR42_RS35890	0.73	-3.8
3,500,564	+		RR42_RS35890	0.73	+0.7
3,500,564	+		RR42_RS35890	0.73	-0.3
3,500,565	-		RR42_RS35890	0.73	+1.0
3,500,713	-		RR42_RS35890	0.88	+0.2
3,500,753	+				+1.5
3,500,754	-				+0.1
3,500,754	-				-1.2
3,500,798	+				-3.8
3,500,799	-				+0.1
3,500,895	+				+0.1
3,500,895	+				+0.7
3,500,983	+				-1.8
3,501,033	+		RR42_RS35895	0.13	+1.0
3,501,123	+		RR42_RS35895	0.29	-2.4
3,501,123	+		RR42_RS35895	0.29	-2.0
3,501,123	+		RR42_RS35895	0.29	+1.0
3,501,123	+		RR42_RS35895	0.29	-1.2
3,501,124	-		RR42_RS35895	0.29	-1.6
3,501,124	-		RR42_RS35895	0.29	+1.2
3,501,304	-		RR42_RS35895	0.62	-2.8
3,501,418	-		RR42_RS35895	0.83	+2.3
3,501,550	+				+1.6
3,501,590	+				-0.1
3,501,697	-				-3.2
3,501,697	-				-2.8
3,501,710	+				-2.1
3,501,711	-				-4.0
3,501,734	-				+0.0
3,501,734	-				-1.7
3,501,734	-				-3.2
3,501,734	-				-3.8
3,501,747	+				-0.6
3,501,747	+				+0.5
3,501,747	+				+1.6
3,501,748	-				-2.4
3,501,922	+		RR42_RS35900	0.46	-1.7
3,501,922	+		RR42_RS35900	0.46	+0.1
3,501,922	+		RR42_RS35900	0.46	-0.2
3,501,923	-		RR42_RS35900	0.46	-2.0
3,501,923	-		RR42_RS35900	0.46	-3.4
3,501,925	+		RR42_RS35900	0.47	-4.7
3,501,925	+		RR42_RS35900	0.47	-2.9
3,501,925	+		RR42_RS35900	0.47	-4.1
3,501,926	-		RR42_RS35900	0.48	-4.0
3,501,957	+		RR42_RS35900	0.62	-5.6
3,501,957	+		RR42_RS35900	0.62	-5.0
3,501,957	+		RR42_RS35900	0.62	-3.5
3,501,957	+		RR42_RS35900	0.62	-0.5
3,501,958	-		RR42_RS35900	0.62	-2.3
3,501,958	-		RR42_RS35900	0.62	-3.1
3,501,958	-		RR42_RS35900	0.62	-3.8
3,501,958	-		RR42_RS35900	0.62	-1.6
3,501,967	+		RR42_RS35900	0.66	-1.5
3,501,967	+		RR42_RS35900	0.66	-2.2
3,501,968	-		RR42_RS35900	0.67	-1.0
3,502,028	-				-0.9
3,502,028	-				-3.8
3,502,223	+				-3.4
3,502,223	+				+0.1
3,502,224	-				+1.1
3,502,486	+		RR42_RS35905	0.20	-2.1
3,502,486	+		RR42_RS35905	0.20	-1.8
3,502,487	-		RR42_RS35905	0.20	+1.2
3,502,487	-		RR42_RS35905	0.20	-1.4
3,502,487	-		RR42_RS35905	0.20	-0.8