Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS35880

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
3,497,081	+		RR42_RS35875	0.31	-2.7
3,497,081	+		RR42_RS35875	0.31	+4.5
3,497,082	-		RR42_RS35875	0.31	+0.4
3,497,082	-		RR42_RS35875	0.31	-2.7
3,497,114	+		RR42_RS35875	0.35	-1.5
3,497,171	+		RR42_RS35875	0.40	+1.9
3,497,171	+		RR42_RS35875	0.40	+0.6
3,497,171	+		RR42_RS35875	0.40	-3.3
3,497,172	-		RR42_RS35875	0.40	+0.1
3,497,172	-		RR42_RS35875	0.40	+1.0
3,497,172	-		RR42_RS35875	0.40	-2.5
3,497,172	-		RR42_RS35875	0.40	+1.3
3,497,258	+		RR42_RS35875	0.49	-1.5
3,497,259	-		RR42_RS35875	0.49	+0.4
3,497,259	-		RR42_RS35875	0.49	-1.1
3,497,334	-		RR42_RS35875	0.56	-1.5
3,497,379	+		RR42_RS35875	0.60	-0.2
3,497,379	+		RR42_RS35875	0.60	-2.8
3,497,478	+		RR42_RS35875	0.70	+2.1
3,497,478	+		RR42_RS35875	0.70	+1.4
3,497,486	+		RR42_RS35875	0.71	+0.5
3,497,486	+		RR42_RS35875	0.71	+0.7
3,497,487	-		RR42_RS35875	0.71	+0.4
3,497,742	+				+0.4
3,497,744	+				-0.9
3,497,744	+				+0.9
3,497,744	+				-1.7
3,497,744	+				+1.1
3,497,745	-				+0.8
3,497,782	-				+0.1
3,497,782	-				-1.2
3,497,782	-				+1.0
3,497,796	+				-1.6
3,497,796	+				+1.8
3,497,797	-				-0.3
3,497,797	-				-0.9
3,497,814	+				+1.1
3,497,815	-				-1.7
3,497,978	+				-2.0
3,497,978	+				-0.2
3,497,979	-				+0.6
3,497,984	+				+1.1
3,497,984	+				+0.2
3,497,984	+				-1.6
3,497,984	+				-0.5
3,497,984	+				+0.7
3,497,985	-				-0.6
3,497,985	-				-1.1
3,497,985	-				-0.3
3,497,985	-				-0.1
3,497,985	-				+0.6
3,498,113	+				+1.1
3,498,113	+				-0.4
3,498,114	-				-0.3
3,498,114	-				-0.9
3,498,114	-				-4.5
3,498,114	-				+0.8
3,498,168	+		RR42_RS35880	0.13	-2.0
3,498,169	-		RR42_RS35880	0.13	-2.1
3,498,251	+		RR42_RS35880	0.22	-0.4
3,498,251	+		RR42_RS35880	0.22	-3.8
3,498,386	+		RR42_RS35880	0.36	-0.8
3,498,387	-		RR42_RS35880	0.36	+2.3
3,498,750	-		RR42_RS35880	0.73	-3.6
3,498,756	-		RR42_RS35880	0.73	-0.2
3,498,878	+		RR42_RS35880	0.86	-2.4
3,499,012	-				-0.2
3,499,012	-				-0.5
3,499,051	+				+1.4
3,499,052	-				-1.2
3,499,052	-				-0.5
3,499,056	+				+1.7
3,499,131	+				-2.6
3,499,189	+				+1.4
3,499,189	+				-0.2
3,499,190	-				+0.6
3,499,232	+				+0.6
3,499,232	+				-0.0
3,499,233	-				-2.7
3,499,233	-				-1.6
3,499,233	-				-4.2
3,499,375	-				-2.7
3,499,642	+		RR42_RS35885	0.70	-2.1
3,499,790	+				-1.6
3,499,790	+				-1.5
3,499,790	+				-2.5
3,499,797	-				+0.6
3,499,810	+				-3.2
3,499,810	+				+0.5
3,499,810	+				-3.9
3,499,811	-				+2.0
3,499,811	-				+4.3
3,499,811	-				-0.4
3,499,811	-				+0.9
3,499,811	-				+0.3