Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS35555

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
3,429,793	+				-2.7
3,429,855	+		RR42_RS35550	0.12	-2.9
3,429,856	-		RR42_RS35550	0.12	+1.6
3,429,856	-		RR42_RS35550	0.12	-0.1
3,429,861	+		RR42_RS35550	0.13	+1.3
3,429,861	+		RR42_RS35550	0.13	-1.9
3,429,862	-		RR42_RS35550	0.13	+1.0
3,429,895	-		RR42_RS35550	0.18	-1.7
3,429,921	+		RR42_RS35550	0.22	-0.3
3,429,921	+		RR42_RS35550	0.22	-2.1
3,429,922	-		RR42_RS35550	0.22	+0.7
3,429,922	-		RR42_RS35550	0.22	+0.3
3,429,975	+		RR42_RS35550	0.30	+0.2
3,429,975	+		RR42_RS35550	0.30	-0.4
3,429,975	+		RR42_RS35550	0.30	+0.1
3,429,976	-		RR42_RS35550	0.30	-4.3
3,430,076	+		RR42_RS35550	0.44	+0.4
3,430,076	+		RR42_RS35550	0.44	+0.5
3,430,077	-		RR42_RS35550	0.44	-3.3
3,430,190	-		RR42_RS35550	0.61	+0.5
3,430,323	+		RR42_RS35550	0.80	+1.4
3,430,324	-		RR42_RS35550	0.80	-1.3
3,430,376	+		RR42_RS35550	0.88	+0.8
3,430,376	+		RR42_RS35550	0.88	+1.7
3,430,377	-		RR42_RS35550	0.88	+1.2
3,430,501	+				+0.5
3,430,501	+				+1.8
3,430,501	+				-0.6
3,430,501	+				+0.2
3,430,502	-				-1.0
3,430,502	-				+2.3
3,430,502	-				-2.2
3,430,502	-				-1.4
3,430,502	-				-3.2
3,430,561	+				-1.1
3,430,562	-				+1.0
3,430,562	-				-1.1
3,430,562	-				+0.6
3,430,562	-				+0.6
3,430,562	-				-3.2
3,430,562	-				-0.6
3,430,597	+				-2.7
3,430,756	+		RR42_RS35555	0.19	-3.3
3,430,756	+		RR42_RS35555	0.19	+1.5
3,430,756	+		RR42_RS35555	0.19	-4.2
3,430,757	-		RR42_RS35555	0.19	-0.0
3,430,757	-		RR42_RS35555	0.19	-0.9
3,430,757	-		RR42_RS35555	0.19	+0.7
3,430,820	-		RR42_RS35555	0.43	+0.6
3,430,844	-		RR42_RS35555	0.52	+1.8
3,430,847	+		RR42_RS35555	0.53	-3.8
3,430,847	+		RR42_RS35555	0.53	-2.7
3,430,847	+				+2.1
3,430,847	+		RR42_RS35555	0.53	-0.4
3,430,847	+		RR42_RS35555	0.53	+0.6
3,430,848	-		RR42_RS35555	0.54	-0.9
3,430,848	-		RR42_RS35555	0.54	-3.4
3,430,848	-		RR42_RS35555	0.54	+2.1
3,430,873	+		RR42_RS35555	0.63	+0.6
3,430,922	+		RR42_RS35555	0.82	+0.1
3,430,930	+		RR42_RS35555	0.85	-1.9
3,430,930	+		RR42_RS35555	0.85	-0.4
3,430,999	+				-0.9
3,430,999	+				+0.8
3,431,071	+				+1.0
3,431,072	-				+0.1
3,431,073	+				-0.2
3,431,073	+				-0.3
3,431,236	+				+1.1
3,431,236	+				+0.1
3,431,249	-				+3.0
3,431,249	-				-1.5
3,431,249	-				-1.6
3,431,250	+				+0.5
3,431,282	+		RR42_RS35560	0.21	+0.3
3,431,283	-		RR42_RS35560	0.22	-3.7
3,431,283	-		RR42_RS35560	0.22	+1.6
3,431,312	+		RR42_RS35560	0.35	+1.9
3,431,312	+		RR42_RS35560	0.35	+0.4
3,431,312	+		RR42_RS35560	0.35	-0.7
3,431,313	-		RR42_RS35560	0.36	+0.9
3,431,313	-		RR42_RS35560	0.36	-2.1
3,431,342	+		RR42_RS35560	0.49	-0.2
3,431,342	+		RR42_RS35560	0.49	+1.8
3,431,342	+		RR42_RS35560	0.49	-1.4
3,431,342	+		RR42_RS35560	0.49	+1.4
3,431,342	+		RR42_RS35560	0.49	-0.6
3,431,342	+		RR42_RS35560	0.49	+0.2
3,431,343	-		RR42_RS35560	0.50	+0.2
3,431,343	-		RR42_RS35560	0.50	+0.8
3,431,343	-		RR42_RS35560	0.50	+0.3
3,431,359	+		RR42_RS35560	0.57	+0.5
3,431,473	-				-2.4
3,431,473	-				-1.1
3,431,473	-				-2.7
3,431,473	-				+1.6
3,431,475	+				-0.0
3,431,475	+				+0.9
3,431,475	+				+1.0
3,431,476	-				-1.8
3,431,476	-				+0.6
3,431,480	+				-0.2
3,431,481	-				+1.1
3,431,488	+				+1.9
3,431,494	+				+0.8
3,431,544	+				-0.1
3,431,580	+				-4.2
3,431,620	-				-0.1
3,431,620	-				-2.2
3,431,620	-				+1.7
3,431,666	+				+0.4
3,431,667	-				+0.5
3,431,695	-				+1.0
3,431,727	+				-3.1
3,431,727	+				-0.1
3,431,731	+				-0.8
3,431,732	-				+1.1
3,431,808	-				-1.0
3,431,858	+		RR42_RS35565	0.15	-3.6
3,431,859	-		RR42_RS35565	0.15	-0.3
3,431,868	+		RR42_RS35565	0.16	-0.9