Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS35490

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
3,412,430	+		RR42_RS35485	0.29	-3.6
3,412,430	+		RR42_RS35485	0.29	+0.7
3,412,431	-		RR42_RS35485	0.29	+2.1
3,412,431	-		RR42_RS35485	0.29	+0.2
3,412,431	-		RR42_RS35485	0.29	-4.0
3,412,537	+		RR42_RS35485	0.37	+0.1
3,412,538	-		RR42_RS35485	0.37	+2.2
3,412,538	-		RR42_RS35485	0.37	-1.0
3,412,561	-		RR42_RS35485	0.39	+0.5
3,412,561	-		RR42_RS35485	0.39	-1.6
3,412,892	-		RR42_RS35485	0.63	+0.6
3,412,899	+		RR42_RS35485	0.64	-1.7
3,412,899	+		RR42_RS35485	0.64	-2.8
3,413,018	+		RR42_RS35485	0.73	-2.7
3,413,018	+		RR42_RS35485	0.73	-2.7
3,413,022	+		RR42_RS35485	0.73	+1.9
3,413,068	+		RR42_RS35485	0.76	-1.2
3,413,068	+		RR42_RS35485	0.76	+0.1
3,413,068	+		RR42_RS35485	0.76	-0.7
3,413,119	+		RR42_RS35485	0.80	-2.9
3,413,119	+		RR42_RS35485	0.80	+0.1
3,413,120	-		RR42_RS35485	0.80	+0.9
3,413,330	-				+0.6
3,413,350	+				+0.3
3,413,350	+				+1.2
3,413,351	-				+0.1
3,413,351	-				+0.4
3,413,402	+				+1.2
3,413,403	-				-1.1
3,413,403	-				+1.3
3,413,403	-				+0.0
3,413,491	+		RR42_RS35490	0.19	-0.8
3,413,492	-		RR42_RS35490	0.19	+0.6
3,413,514	-		RR42_RS35490	0.23	+1.0
3,413,577	+		RR42_RS35490	0.32	+0.7
3,413,578	-		RR42_RS35490	0.32	-2.2
3,413,734	+		RR42_RS35490	0.56	-2.2
3,413,735	-		RR42_RS35490	0.56	-3.5
3,413,775	+		RR42_RS35490	0.62	-0.3
3,413,776	-		RR42_RS35490	0.62	-0.9
3,413,838	+		RR42_RS35490	0.71	+2.0
3,413,838	+		RR42_RS35490	0.71	+0.8
3,413,838	+		RR42_RS35490	0.71	+0.2
3,413,838	+		RR42_RS35490	0.71	+1.0
3,413,839	-		RR42_RS35490	0.72	-0.2
3,413,842	-		RR42_RS35490	0.72	+0.4
3,413,979	+				-0.6
3,414,016	-				+0.8
3,414,016	-				+1.0
3,414,097	+				-3.0
3,414,098	-				-0.6
3,414,098	-				-2.8
3,414,098	-				+0.0
3,414,109	-				-0.4
3,414,109	-				+1.2
3,414,125	+				+0.4
3,414,125	+				-1.4
3,414,150	-				-3.8
3,414,153	+				+1.0
3,414,154	-				+1.5
3,414,154	-				-2.8
3,414,400	+				-2.9
3,414,401	-				+0.9
3,414,401	-				+1.0
3,414,565	+		RR42_RS35495	0.17	-0.2
3,414,568	+		RR42_RS35495	0.18	+0.2
3,414,568	+		RR42_RS35495	0.18	-1.4
3,414,569	-		RR42_RS35495	0.18	-1.7
3,414,623	+		RR42_RS35495	0.21	+3.2
3,414,624	-		RR42_RS35495	0.22	-0.0
3,414,624	-		RR42_RS35495	0.22	-1.7
3,414,817	-		RR42_RS35495	0.35	-0.9
3,414,855	-		RR42_RS35495	0.38	-3.0
3,414,855	-		RR42_RS35495	0.38	+0.1
3,414,855	-		RR42_RS35495	0.38	+1.8
3,414,874	-		RR42_RS35495	0.39	-0.0
3,414,927	+		RR42_RS35495	0.43	-0.3