Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS35095

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
3,325,238	+		RR42_RS35090	0.67	+0.2
3,325,238	+		RR42_RS35090	0.67	+0.7
3,325,239	-		RR42_RS35090	0.67	+0.4
3,325,239	-		RR42_RS35090	0.67	-0.0
3,325,239	-		RR42_RS35090	0.67	-0.1
3,325,239	-		RR42_RS35090	0.67	+0.3
3,325,529	+		RR42_RS35090	0.85	+2.6
3,325,532	+		RR42_RS35090	0.85	+0.1
3,325,532	+		RR42_RS35090	0.85	+1.7
3,325,533	-		RR42_RS35090	0.85	+1.8
3,325,533	-		RR42_RS35090	0.85	-2.5
3,325,583	+		RR42_RS35090	0.88	-3.7
3,325,583	+		RR42_RS35090	0.88	+0.9
3,325,584	-		RR42_RS35090	0.88	-2.9
3,325,584	-		RR42_RS35090	0.88	+1.8
3,325,584	-		RR42_RS35090	0.88	+0.2
3,325,584	-		RR42_RS35090	0.88	-3.3
3,325,584	-		RR42_RS35090	0.88	+0.5
3,325,604	+		RR42_RS35090	0.89	+2.0
3,325,604	+		RR42_RS35090	0.89	-0.0
3,325,605	-		RR42_RS35090	0.89	-3.2
3,325,605	-		RR42_RS35090	0.89	+0.5
3,325,605	-		RR42_RS35090	0.89	-2.2
3,325,605	-		RR42_RS35090	0.89	-1.3
3,325,605	-		RR42_RS35090	0.89	-0.5
3,325,607	+		RR42_RS35090	0.89	-4.4
3,325,749	+				-1.9
3,325,749	+				+0.9
3,325,749	+				-0.7
3,325,815	-				+0.1
3,325,900	+				+0.7
3,325,900	+				+1.3
3,325,979	+				-2.8
3,325,986	-				-4.2
3,325,986	-				+0.2
3,326,055	+				-3.3
3,326,223	-		RR42_RS35095	0.13	+0.3
3,326,227	+		RR42_RS35095	0.14	-3.0
3,326,228	-		RR42_RS35095	0.14	+0.6
3,326,228	-		RR42_RS35095	0.14	+2.6
3,326,246	+		RR42_RS35095	0.15	-0.7
3,326,247	-		RR42_RS35095	0.15	-0.9
3,326,315	+		RR42_RS35095	0.21	-1.3
3,326,315	+		RR42_RS35095	0.21	+1.1
3,326,377	+		RR42_RS35095	0.27	-2.8
3,326,445	+		RR42_RS35095	0.33	-2.8
3,326,643	-		RR42_RS35095	0.50	-2.7
3,326,643	-		RR42_RS35095	0.50	+1.9
3,326,669	+		RR42_RS35095	0.52	-0.6
3,326,700	+		RR42_RS35095	0.55	+0.6
3,326,700	+		RR42_RS35095	0.55	+0.6
3,326,701	-		RR42_RS35095	0.55	-1.5
3,326,795	+		RR42_RS35095	0.63	-2.0
3,326,795	+		RR42_RS35095	0.63	+0.5
3,326,796	-		RR42_RS35095	0.63	+0.9
3,326,796	-		RR42_RS35095	0.63	+1.2
3,326,796	-		RR42_RS35095	0.63	+0.9
3,326,796	-		RR42_RS35095	0.63	-1.4
3,326,849	+		RR42_RS35095	0.68	-0.9
3,326,849	+		RR42_RS35095	0.68	-2.5
3,326,849	+		RR42_RS35095	0.68	+0.1
3,326,849	+		RR42_RS35095	0.68	-1.3
3,326,849	+		RR42_RS35095	0.68	-1.5
3,326,850	-		RR42_RS35095	0.68	-0.4
3,326,850	-		RR42_RS35095	0.68	-1.6
3,326,850	-		RR42_RS35095	0.68	-0.3
3,326,918	+		RR42_RS35095	0.74	+0.8
3,326,918	+		RR42_RS35095	0.74	-2.5
3,326,918	+		RR42_RS35095	0.74	-0.0
3,326,918	+		RR42_RS35095	0.74	-0.5
3,326,918	+		RR42_RS35095	0.74	-0.4
3,326,919	-		RR42_RS35095	0.74	+0.5
3,326,919	-		RR42_RS35095	0.74	+0.5
3,326,919	-		RR42_RS35095	0.74	+0.7
3,326,919	-		RR42_RS35095	0.74	+0.0
3,326,919	-		RR42_RS35095	0.74	-1.8
3,326,919	-		RR42_RS35095	0.74	+0.1
3,326,919	-		RR42_RS35095	0.74	-2.9
3,327,013	-		RR42_RS35095	0.82	+0.8
3,327,040	+		RR42_RS35095	0.84	+0.0
3,327,041	-		RR42_RS35095	0.84	-0.5
3,327,093	-		RR42_RS35095	0.89	+1.7
3,327,098	+		RR42_RS35095	0.89	-0.6
3,327,098	+		RR42_RS35095	0.89	+0.2
3,327,099	-		RR42_RS35095	0.89	-1.3
3,327,099	-		RR42_RS35095	0.89	-2.9
3,327,099	-		RR42_RS35095	0.89	+1.0
3,327,099	-		RR42_RS35095	0.89	+1.8
3,327,099	-		RR42_RS35095	0.89	-1.6
3,327,179	-				+0.7
3,327,286	+				+1.0
3,327,286	+				-2.5
3,327,286	+				+2.2
3,327,286	+				-0.9
3,327,287	-				-3.5
3,327,287	-				-3.9
3,327,320	-				+0.6
3,327,339	-				-1.8
3,327,385	+				+0.1
3,327,386	-				-3.7
3,327,386	-				-2.3
3,327,386	-				+0.9
3,327,386	-				-2.3
3,327,407	+				-0.0
3,327,407	+				+0.3
3,327,407	+				-1.6
3,327,408	-				+1.4
3,327,408	-				+0.3
3,327,553	+				+1.0
3,327,931	+		RR42_RS35100	0.62	+0.4
3,327,932	-		RR42_RS35100	0.62	+1.0
3,327,966	+		RR42_RS35100	0.68	-0.9
3,327,966	+		RR42_RS35100	0.68	+1.2
3,327,978	+		RR42_RS35100	0.70	+1.1
3,327,978	+		RR42_RS35100	0.70	-0.4
3,327,978	+		RR42_RS35100	0.70	-3.9
3,328,018	+		RR42_RS35100	0.77	-2.0
3,328,019	-		RR42_RS35100	0.77	-1.8
3,328,019	-		RR42_RS35100	0.77	-1.6
3,328,019	-		RR42_RS35100	0.77	-0.7