Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS35090

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
3,323,181	+		RR42_RS35080	0.54	-2.0
3,323,190	+		RR42_RS35080	0.55	-2.0
3,323,190	+		RR42_RS35080	0.55	-3.3
3,323,190	+		RR42_RS35080	0.55	-0.4
3,323,190	+		RR42_RS35080	0.55	+0.4
3,323,191	-		RR42_RS35080	0.55	+1.1
3,323,191	-		RR42_RS35080	0.55	-2.9
3,323,191	-		RR42_RS35080	0.55	-3.9
3,323,191	-		RR42_RS35080	0.55	-0.2
3,323,247	+		RR42_RS35080	0.62	-2.3
3,323,247	+		RR42_RS35080	0.62	-1.3
3,323,248	-		RR42_RS35080	0.62	-1.1
3,323,248	-		RR42_RS35080	0.62	-2.0
3,323,288	-		RR42_RS35080	0.66	-3.3
3,323,289	+		RR42_RS35080	0.66	-0.8
3,323,289	+		RR42_RS35080	0.66	-1.1
3,323,290	-		RR42_RS35080	0.67	-3.3
3,323,290	-		RR42_RS35080	0.67	-1.8
3,323,290	-		RR42_RS35080	0.67	-1.1
3,323,290	-		RR42_RS35080	0.67	-0.6
3,323,496	+		RR42_RS35080	0.90	-3.7
3,323,497	-		RR42_RS35080	0.90	+0.0
3,323,548	+				-2.6
3,323,548	+				-3.3
3,323,549	-				-2.3
3,323,587	-				-0.3
3,323,587	-				+1.1
3,323,587	-				-3.2
3,323,863	+		RR42_RS35085	0.48	+0.5
3,323,864	-		RR42_RS35085	0.48	+0.9
3,323,873	+		RR42_RS35085	0.50	-1.2
3,323,979	+		RR42_RS35085	0.72	+0.5
3,323,979	+		RR42_RS35085	0.72	+0.5
3,323,979	+		RR42_RS35085	0.72	-1.4
3,323,980	-		RR42_RS35085	0.73	-2.5
3,324,045	+		RR42_RS35085	0.87	+0.5
3,324,046	-		RR42_RS35085	0.87	-2.3
3,324,046	-		RR42_RS35085	0.87	+1.2
3,324,046	-		RR42_RS35085	0.87	-2.9
3,324,054	+		RR42_RS35085	0.89	-2.5
3,324,074	+				-2.4
3,324,074	+				+1.4
3,324,075	-				-1.2
3,324,075	-				+1.7
3,324,291	+				+1.7
3,324,291	+				-0.8
3,324,292	-				-2.3
3,324,479	+		RR42_RS35090	0.20	-0.3
3,324,480	-		RR42_RS35090	0.20	-2.8
3,324,643	+		RR42_RS35090	0.30	+1.6
3,324,643	+		RR42_RS35090	0.30	+1.3
3,324,643	+		RR42_RS35090	0.30	-2.5
3,324,643	+		RR42_RS35090	0.30	-3.5
3,324,643	+		RR42_RS35090	0.30	+0.7
3,324,643	+		RR42_RS35090	0.30	-0.5
3,324,644	-		RR42_RS35090	0.30	-0.9
3,324,644	-		RR42_RS35090	0.30	-0.4
3,324,644	-		RR42_RS35090	0.30	+0.2
3,324,644	-		RR42_RS35090	0.30	+1.3
3,324,644	-		RR42_RS35090	0.30	-1.1
3,324,644	-		RR42_RS35090	0.30	-0.9
3,324,644	-		RR42_RS35090	0.30	-2.7
3,324,644	-		RR42_RS35090	0.30	+0.1
3,324,644	-		RR42_RS35090	0.30	-1.1
3,324,644	-		RR42_RS35090	0.30	-1.1
3,324,744	+		RR42_RS35090	0.36	-3.0
3,324,744	+		RR42_RS35090	0.36	+0.5
3,324,744	+		RR42_RS35090	0.36	-2.5
3,324,744	+		RR42_RS35090	0.36	-1.6
3,324,745	-		RR42_RS35090	0.36	-2.0
3,324,745	-		RR42_RS35090	0.36	+2.4
3,324,745	-		RR42_RS35090	0.36	+1.3
3,324,745	-		RR42_RS35090	0.36	-2.6
3,324,745	-		RR42_RS35090	0.36	-3.3
3,324,745	-		RR42_RS35090	0.36	-3.6
3,324,745	-		RR42_RS35090	0.36	-0.6
3,324,750	+		RR42_RS35090	0.36	-2.8
3,324,789	+		RR42_RS35090	0.39	+1.0
3,324,789	+		RR42_RS35090	0.39	+0.0
3,324,851	+		RR42_RS35090	0.43	-0.6
3,324,885	-		RR42_RS35090	0.45	-0.0
3,325,010	-		RR42_RS35090	0.52	-2.4
3,325,238	+		RR42_RS35090	0.67	+0.2
3,325,238	+		RR42_RS35090	0.67	+0.7
3,325,239	-		RR42_RS35090	0.67	+0.4
3,325,239	-		RR42_RS35090	0.67	-0.0
3,325,239	-		RR42_RS35090	0.67	-0.1
3,325,239	-		RR42_RS35090	0.67	+0.3
3,325,529	+		RR42_RS35090	0.85	+2.6
3,325,532	+		RR42_RS35090	0.85	+0.1
3,325,532	+		RR42_RS35090	0.85	+1.7
3,325,533	-		RR42_RS35090	0.85	+1.8
3,325,533	-		RR42_RS35090	0.85	-2.5
3,325,583	+		RR42_RS35090	0.88	-3.7
3,325,583	+		RR42_RS35090	0.88	+0.9
3,325,584	-		RR42_RS35090	0.88	-2.9
3,325,584	-		RR42_RS35090	0.88	+1.8
3,325,584	-		RR42_RS35090	0.88	+0.2
3,325,584	-		RR42_RS35090	0.88	-3.3
3,325,584	-		RR42_RS35090	0.88	+0.5
3,325,604	+		RR42_RS35090	0.89	+2.0
3,325,604	+		RR42_RS35090	0.89	-0.0
3,325,605	-		RR42_RS35090	0.89	-3.2
3,325,605	-		RR42_RS35090	0.89	+0.5
3,325,605	-		RR42_RS35090	0.89	-2.2
3,325,605	-		RR42_RS35090	0.89	-1.3
3,325,605	-		RR42_RS35090	0.89	-0.5
3,325,607	+		RR42_RS35090	0.89	-4.4
3,325,749	+				-1.9
3,325,749	+				+0.9
3,325,749	+				-0.7
3,325,815	-				+0.1
3,325,900	+				+0.7
3,325,900	+				+1.3
3,325,979	+				-2.8
3,325,986	-				-4.2
3,325,986	-				+0.2
3,326,055	+				-3.3
3,326,223	-		RR42_RS35095	0.13	+0.3
3,326,227	+		RR42_RS35095	0.14	-3.0
3,326,228	-		RR42_RS35095	0.14	+0.6
3,326,228	-		RR42_RS35095	0.14	+2.6
3,326,246	+		RR42_RS35095	0.15	-0.7
3,326,247	-		RR42_RS35095	0.15	-0.9
3,326,315	+		RR42_RS35095	0.21	-1.3
3,326,315	+		RR42_RS35095	0.21	+1.1
3,326,377	+		RR42_RS35095	0.27	-2.8
3,326,445	+		RR42_RS35095	0.33	-2.8
3,326,643	-		RR42_RS35095	0.50	-2.7
3,326,643	-		RR42_RS35095	0.50	+1.9
3,326,669	+		RR42_RS35095	0.52	-0.6
3,326,700	+		RR42_RS35095	0.55	+0.6
3,326,700	+		RR42_RS35095	0.55	+0.6
3,326,701	-		RR42_RS35095	0.55	-1.5