Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS34725 and RR42_RS34730 are separated by 441 nucleotides
RR42_RS34725: RR42_RS34725 - transcriptional regulator, at 3,235,400 to 3,236,002
_RS34725
RR42_RS34730: RR42_RS34730 - chemotaxis protein, at 3,236,444 to 3,238,081
_RS34730
Position (kb)
3235
3236
3237 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 3234.433 kb on - strand at 3234.565 kb on + strand at 3234.565 kb on + strand at 3234.565 kb on + strand at 3234.566 kb on - strand at 3234.566 kb on - strand at 3234.591 kb on + strand at 3234.591 kb on + strand at 3234.591 kb on + strand at 3234.592 kb on - strand at 3234.592 kb on - strand at 3234.649 kb on - strand at 3234.649 kb on - strand at 3234.649 kb on - strand at 3234.721 kb on - strand at 3234.721 kb on - strand at 3234.721 kb on - strand at 3234.827 kb on + strand at 3234.861 kb on + strand at 3234.861 kb on + strand at 3234.861 kb on + strand at 3234.862 kb on - strand at 3234.862 kb on - strand at 3234.889 kb on + strand at 3234.890 kb on - strand at 3234.890 kb on - strand at 3234.937 kb on - strand at 3235.187 kb on + strand at 3235.188 kb on - strand at 3235.188 kb on - strand at 3235.260 kb on + strand at 3235.261 kb on - strand at 3235.372 kb on + strand at 3235.372 kb on + strand at 3235.765 kb on + strand, within RR42_RS34725 at 3235.765 kb on + strand, within RR42_RS34725 at 3235.765 kb on + strand, within RR42_RS34725 at 3235.765 kb on + strand, within RR42_RS34725 at 3235.765 kb on + strand, within RR42_RS34725 at 3235.766 kb on - strand, within RR42_RS34725 at 3235.870 kb on - strand, within RR42_RS34725 at 3235.907 kb on + strand, within RR42_RS34725 at 3235.908 kb on - strand, within RR42_RS34725 at 3235.941 kb on + strand, within RR42_RS34725 at 3235.941 kb on + strand, within RR42_RS34725 at 3235.942 kb on - strand at 3235.942 kb on - strand at 3235.973 kb on + strand at 3235.973 kb on + strand at 3235.978 kb on - strand at 3235.994 kb on + strand at 3236.007 kb on + strand at 3236.007 kb on + strand at 3236.008 kb on - strand at 3236.075 kb on + strand at 3236.076 kb on - strand at 3236.076 kb on - strand at 3236.138 kb on + strand at 3236.138 kb on + strand at 3236.171 kb on - strand at 3236.322 kb on + strand at 3236.323 kb on - strand at 3236.353 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 3,234,433 - -0.3 3,234,565 + -4.0 3,234,565 + +0.4 3,234,565 + -2.9 3,234,566 - +0.7 3,234,566 - +0.1 3,234,591 + -0.8 3,234,591 + -1.0 3,234,591 + -1.8 3,234,592 - +0.5 3,234,592 - +1.1 3,234,649 - -1.2 3,234,649 - -0.5 3,234,649 - -1.1 3,234,721 - +0.4 3,234,721 - -0.7 3,234,721 - -2.5 3,234,827 + +0.8 3,234,861 + +1.4 3,234,861 + +0.7 3,234,861 + +2.3 3,234,862 - +0.4 3,234,862 - +0.7 3,234,889 + -3.8 3,234,890 - -3.6 3,234,890 - -0.1 3,234,937 - -2.0 3,235,187 + -0.7 3,235,188 - +0.2 3,235,188 - +1.1 3,235,260 + +1.3 3,235,261 - +0.0 3,235,372 + +0.3 3,235,372 + +0.2 3,235,765 + RR42_RS34725 0.61 +2.1 3,235,765 + RR42_RS34725 0.61 -0.6 3,235,765 + RR42_RS34725 0.61 +3.0 3,235,765 + RR42_RS34725 0.61 -3.5 3,235,765 + RR42_RS34725 0.61 -3.4 3,235,766 - RR42_RS34725 0.61 -1.3 3,235,870 - RR42_RS34725 0.78 +0.5 3,235,907 + RR42_RS34725 0.84 -3.5 3,235,908 - RR42_RS34725 0.84 +0.9 3,235,941 + RR42_RS34725 0.90 +1.5 3,235,941 + RR42_RS34725 0.90 +0.5 3,235,942 - +1.1 3,235,942 - +1.3 3,235,973 + +0.4 3,235,973 + -3.0 3,235,978 - +0.0 3,235,994 + +0.8 3,236,007 + -0.4 3,236,007 + -0.4 3,236,008 - -0.4 3,236,075 + -2.0 3,236,076 - -0.7 3,236,076 - +2.9 3,236,138 + -0.8 3,236,138 + -0.6 3,236,171 - +0.0 3,236,322 + +1.5 3,236,323 - -1.6 3,236,353 + -0.6
Or see this region's nucleotide sequence