Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS34200 and RR42_RS34205 are separated by 324 nucleotides RR42_RS34205 and RR42_RS34210 are separated by 220 nucleotides RR42_RS34210 and RR42_RS34215 are separated by 257 nucleotides RR42_RS34215 and RR42_RS34220 are separated by 278 nucleotides
RR42_RS34200: RR42_RS34200 - membrane protein, at 3,098,429 to 3,099,205
_RS34200
RR42_RS34205: RR42_RS34205 - hypothetical protein, at 3,099,530 to 3,099,880
_RS34205
RR42_RS34210: RR42_RS34210 - hypothetical protein, at 3,100,101 to 3,100,490
_RS34210
RR42_RS34215: RR42_RS34215 - ferredoxin, at 3,100,748 to 3,101,068
_RS34215
RR42_RS34220: RR42_RS34220 - pyruvate dehydrogenase, at 3,101,347 to 3,104,022
_RS34220
Position (kb)
3100
3101 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 3099.120 kb on - strand, within RR42_RS34200 at 3099.327 kb on - strand at 3099.434 kb on - strand at 3099.434 kb on - strand at 3099.476 kb on - strand at 3099.535 kb on + strand at 3099.588 kb on - strand, within RR42_RS34205 at 3099.792 kb on - strand, within RR42_RS34205 at 3099.806 kb on + strand, within RR42_RS34205 at 3099.807 kb on - strand, within RR42_RS34205 at 3099.807 kb on - strand, within RR42_RS34205 at 3099.939 kb on + strand at 3100.270 kb on + strand, within RR42_RS34210 at 3100.271 kb on - strand, within RR42_RS34210 at 3100.271 kb on - strand, within RR42_RS34210 at 3100.496 kb on + strand at 3100.537 kb on - strand at 3100.582 kb on + strand at 3100.614 kb on - strand at 3100.730 kb on - strand at 3100.731 kb on + strand at 3100.731 kb on + strand at 3100.731 kb on + strand at 3100.893 kb on + strand, within RR42_RS34215 at 3101.308 kb on + strand at 3101.309 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 3,099,120 - RR42_RS34200 0.89 +0.6 3,099,327 - +0.7 3,099,434 - -3.0 3,099,434 - -1.7 3,099,476 - -3.7 3,099,535 + +0.1 3,099,588 - RR42_RS34205 0.17 -1.0 3,099,792 - RR42_RS34205 0.75 +0.8 3,099,806 + RR42_RS34205 0.79 +1.3 3,099,807 - RR42_RS34205 0.79 -2.6 3,099,807 - RR42_RS34205 0.79 -3.8 3,099,939 + +1.7 3,100,270 + RR42_RS34210 0.43 -1.9 3,100,271 - RR42_RS34210 0.44 -4.1 3,100,271 - RR42_RS34210 0.44 -3.6 3,100,496 + +0.7 3,100,537 - -0.1 3,100,582 + +1.5 3,100,614 - +0.8 3,100,730 - -0.3 3,100,731 + +0.1 3,100,731 + -3.2 3,100,731 + -1.3 3,100,893 + RR42_RS34215 0.45 +1.7 3,101,308 + +1.1 3,101,309 - -0.2
Or see this region's nucleotide sequence