Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS34160

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
3,088,928	+		RR42_RS34150	0.63	+1.2
3,088,929	-		RR42_RS34150	0.63	+1.6
3,089,102	+				-1.1
3,089,102	+				-0.6
3,089,102	+				-0.3
3,089,102	+				+0.0
3,089,102	+				-0.5
3,089,103	-				-0.4
3,089,103	-				-0.0
3,089,103	-				+1.7
3,089,106	+				-1.0
3,089,107	-				+0.1
3,089,107	-				-3.0
3,089,107	-				+0.1
3,089,107	-				-0.6
3,089,163	+				+0.1
3,089,335	-				-0.4
3,089,475	+				-0.5
3,089,497	-				+0.4
3,089,531	+				-3.0
3,089,531	+				+1.8
3,089,531	+				-3.9
3,089,555	+				-0.6
3,089,624	+				-3.1
3,089,625	-				-3.2
3,089,625	-				-3.4
3,089,625	-				+1.1
3,089,625	-				+1.9
3,089,625	-				+0.2
3,089,625	-				+0.7
3,089,628	+				+0.7
3,089,629	-				+0.4
3,089,629	-				+0.7
3,089,629	-				-0.5
3,089,631	+				-1.2
3,089,631	+				-4.7
3,089,632	-				+0.8
3,089,734	+		RR42_RS34155	0.40	+0.5
3,089,735	-		RR42_RS34155	0.40	-2.9
3,089,741	+		RR42_RS34155	0.43	+1.4
3,089,741	+		RR42_RS34155	0.43	-0.2
3,089,884	+				-0.7
3,089,884	+				+0.1
3,089,884	+				-1.2
3,089,884	+				+1.5
3,089,884	+				-3.0
3,089,885	-				-2.9
3,090,026	-		RR42_RS34160	0.19	+1.1
3,090,026	-		RR42_RS34160	0.19	-1.9
3,090,205	-		RR42_RS34160	0.43	-0.2
3,090,205	-		RR42_RS34160	0.43	+0.7
3,090,205	-		RR42_RS34160	0.43	+0.4
3,090,205	-		RR42_RS34160	0.43	+0.4
3,090,261	+		RR42_RS34160	0.51	+0.6
3,090,261	+		RR42_RS34160	0.51	-0.2
3,090,323	-		RR42_RS34160	0.59	-0.2
3,090,386	+		RR42_RS34160	0.68	+2.8
3,090,386	+		RR42_RS34160	0.68	+0.2
3,090,386	+		RR42_RS34160	0.68	-1.7
3,090,658	+				-2.1
3,090,658	+				-0.9
3,090,658	+				+1.6
3,090,659	-				+0.8
3,090,659	-				-0.8
3,090,660	+				+0.3
3,090,660	+				-0.4
3,090,660	+				+1.1
3,090,660	+				+1.9
3,090,660	+				+0.4
3,090,661	-				-4.3
3,090,663	-				+1.6
3,090,663	-				+1.0
3,090,697	+				-0.0
3,090,743	-				-3.9
3,090,769	-				-0.2
3,090,769	-				-3.5
3,090,863	+		RR42_RS34165	0.11	-1.6
3,090,864	-		RR42_RS34165	0.11	-3.3
3,090,891	+		RR42_RS34165	0.14	-2.8
3,090,904	+		RR42_RS34165	0.15	+1.9
3,090,905	-		RR42_RS34165	0.15	+2.0
3,091,020	+		RR42_RS34165	0.27	-0.5
3,091,084	+		RR42_RS34165	0.34	-1.7
3,091,084	+		RR42_RS34165	0.34	+1.8
3,091,084	+		RR42_RS34165	0.34	-0.8
3,091,084	+		RR42_RS34165	0.34	-3.3
3,091,222	+		RR42_RS34165	0.48	-0.8
3,091,222	+		RR42_RS34165	0.48	-0.9
3,091,243	+		RR42_RS34165	0.50	-0.5
3,091,244	-		RR42_RS34165	0.50	+1.2
3,091,303	+		RR42_RS34165	0.56	-3.0
3,091,303	+		RR42_RS34165	0.56	-2.3
3,091,303	+		RR42_RS34165	0.56	-1.6
3,091,303	+		RR42_RS34165	0.56	+1.0
3,091,304	-		RR42_RS34165	0.56	+0.5
3,091,304	-		RR42_RS34165	0.56	-0.1
3,091,304	-		RR42_RS34165	0.56	+1.8
3,091,489	+		RR42_RS34165	0.76	+0.7
3,091,489	+		RR42_RS34165	0.76	-0.7
3,091,489	+		RR42_RS34165	0.76	-2.1
3,091,492	+		RR42_RS34165	0.76	+0.1
3,091,492	+		RR42_RS34165	0.76	-3.3
3,091,492	+		RR42_RS34165	0.76	+0.7
3,091,492	+		RR42_RS34165	0.76	+2.2
3,091,493	-		RR42_RS34165	0.76	-4.1
3,091,493	-		RR42_RS34165	0.76	-0.3
3,091,493	-		RR42_RS34165	0.76	+0.4
3,091,493	-		RR42_RS34165	0.76	-3.6
3,091,493	-		RR42_RS34165	0.76	-2.0
3,091,530	+		RR42_RS34165	0.80	-2.6
3,091,580	-		RR42_RS34165	0.85	-1.7
3,091,580	-		RR42_RS34165	0.85	+0.8