Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS33480

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
2,926,391	-				+1.9
2,926,407	+				-0.9
2,926,407	+				+0.8
2,926,407	+				+1.2
2,926,408	-				+1.0
2,926,408	-				+0.2
2,926,434	-		RR42_RS33470	0.14	+1.4
2,926,585	+		RR42_RS33470	0.60	+1.2
2,926,586	-		RR42_RS33470	0.60	-0.2
2,926,586	-		RR42_RS33470	0.60	-3.8
2,926,586	-		RR42_RS33470	0.60	-2.6
2,926,621	+		RR42_RS33470	0.71	-4.3
2,926,622	-		RR42_RS33470	0.71	+0.3
2,926,622	-		RR42_RS33470	0.71	-0.4
2,926,625	+		RR42_RS33470	0.72	-4.1
2,926,625	+		RR42_RS33470	0.72	+1.5
2,926,648	+		RR42_RS33470	0.79	+2.2
2,926,648	+		RR42_RS33470	0.79	+1.3
2,926,648	+		RR42_RS33470	0.79	-0.4
2,926,649	-		RR42_RS33470	0.80	-2.9
2,926,649	-		RR42_RS33470	0.80	-3.0
2,926,649	-		RR42_RS33470	0.80	-3.2
2,926,649	-		RR42_RS33470	0.80	+1.5
2,926,649	-		RR42_RS33470	0.80	+1.1
2,926,652	+		RR42_RS33470	0.80	+2.3
2,926,652	+		RR42_RS33470	0.80	+1.5
2,926,653	-		RR42_RS33470	0.81	+0.4
2,926,690	+				+0.4
2,926,690	+				-0.8
2,926,767	+				+0.6
2,926,768	-				+0.2
2,926,768	-				-0.6
2,926,849	+		RR42_RS33475	0.27	-1.4
2,926,850	-		RR42_RS33475	0.27	-2.5
2,926,850	-		RR42_RS33475	0.27	+0.3
2,926,850	-		RR42_RS33475	0.27	-0.7
2,926,850	-		RR42_RS33475	0.27	-3.3
2,926,850	-		RR42_RS33475	0.27	-0.8
2,926,850	-		RR42_RS33475	0.27	-2.9
2,926,873	+		RR42_RS33475	0.39	+0.4
2,927,013	-				+0.4
2,927,042	-				+1.1
2,927,134	+				+0.5
2,927,134	+				-2.6
2,927,135	-				-0.3
2,927,135	-				-0.1
2,927,135	-				-1.6
2,927,138	+				+0.3
2,927,146	-				-0.2
2,927,146	-				-0.1
2,927,146	-				-1.3
2,927,346	+				+2.3
2,927,346	+				+0.4
2,927,362	+				+0.4
2,927,363	-				+1.0
2,927,503	+		RR42_RS33480	0.21	-0.0
2,927,593	+		RR42_RS33480	0.32	-0.2
2,927,593	+		RR42_RS33480	0.32	+1.9
2,927,593	+		RR42_RS33480	0.32	+1.1
2,927,593	+		RR42_RS33480	0.32	-4.2
2,927,594	-		RR42_RS33480	0.32	+0.9
2,927,594	-		RR42_RS33480	0.32	-1.7
2,927,594	-		RR42_RS33480	0.32	-2.0
2,927,594	-		RR42_RS33480	0.32	+0.5
2,927,594	-		RR42_RS33480	0.32	-3.4
2,927,594	-		RR42_RS33480	0.32	+1.0
2,927,594	-		RR42_RS33480	0.32	+0.6
2,927,594	-		RR42_RS33480	0.32	-2.7
2,927,594	-		RR42_RS33480	0.32	-0.2
2,927,729	-		RR42_RS33480	0.49	+0.4
2,927,729	-		RR42_RS33480	0.49	+1.3
2,927,729	-		RR42_RS33480	0.49	-1.3
2,927,729	-		RR42_RS33480	0.49	+0.8
2,927,821	+		RR42_RS33480	0.60	+1.7
2,927,858	+		RR42_RS33480	0.64	+0.2
2,927,858	+		RR42_RS33480	0.64	-2.2
2,927,859	-		RR42_RS33480	0.65	+2.0
2,927,872	+		RR42_RS33480	0.66	+1.3
2,927,872	+		RR42_RS33480	0.66	+0.9
2,927,873	-		RR42_RS33480	0.66	-0.2
2,927,892	+		RR42_RS33480	0.69	+1.3
2,927,902	+		RR42_RS33480	0.70	+0.4
2,927,903	-		RR42_RS33480	0.70	-1.7
2,927,971	+		RR42_RS33480	0.78	-1.4
2,927,971	+		RR42_RS33480	0.78	-1.7
2,927,972	-		RR42_RS33480	0.78	+0.3
2,927,972	-		RR42_RS33480	0.78	-2.4
2,928,210	+				+1.0
2,928,210	+				+2.2
2,928,544	+		RR42_RS33485	0.85	+0.2
2,928,544	+		RR42_RS33485	0.85	+0.8
2,928,545	-		RR42_RS33485	0.85	-1.7
2,928,771	-				+0.6
2,928,824	+		RR42_RS33490	0.13	+0.3
2,928,824	+		RR42_RS33490	0.13	-3.3
2,928,824	+		RR42_RS33490	0.13	-5.1
2,928,824	+		RR42_RS33490	0.13	+1.1
2,928,824	+		RR42_RS33490	0.13	+1.0
2,928,825	-		RR42_RS33490	0.13	-2.8
2,928,825	-		RR42_RS33490	0.13	-0.7
2,928,825	-		RR42_RS33490	0.13	+1.0
2,928,961	-		RR42_RS33490	0.24	+0.1
2,929,025	+		RR42_RS33490	0.30	-2.3
2,929,025	+		RR42_RS33490	0.30	+1.2
2,929,026	-		RR42_RS33490	0.30	+0.4