Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS32730 and RR42_RS32735 are separated by 23 nucleotides RR42_RS32735 and RR42_RS32740 are separated by 44 nucleotides RR42_RS32740 and RR42_RS32745 are separated by 109 nucleotides
RR42_RS32730: RR42_RS32730 - terpene utilization protein AtuA, at 2,736,666 to 2,738,453
_RS32730
RR42_RS32735: RR42_RS32735 - 3-methylcrotonyl-CoA carboxylase, at 2,738,477 to 2,740,501
_RS32735
RR42_RS32740: RR42_RS32740 - enoyl-CoA hydratase, at 2,740,546 to 2,741,367
_RS32740
RR42_RS32745: RR42_RS32745 - acyl-CoA dehydrogenase, at 2,741,477 to 2,742,637
_RS32745
Position (kb)
2738
2739
2740
2741 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2737.531 kb on + strand, within RR42_RS32730 at 2737.531 kb on + strand, within RR42_RS32730 at 2737.532 kb on - strand, within RR42_RS32730 at 2737.603 kb on - strand, within RR42_RS32730 at 2737.603 kb on - strand, within RR42_RS32730 at 2737.622 kb on + strand, within RR42_RS32730 at 2737.639 kb on + strand, within RR42_RS32730 at 2737.639 kb on + strand, within RR42_RS32730 at 2737.640 kb on - strand, within RR42_RS32730 at 2737.663 kb on + strand, within RR42_RS32730 at 2737.663 kb on + strand, within RR42_RS32730 at 2737.663 kb on + strand, within RR42_RS32730 at 2737.664 kb on - strand, within RR42_RS32730 at 2738.345 kb on - strand at 2738.350 kb on + strand at 2738.351 kb on - strand at 2738.360 kb on - strand at 2738.433 kb on + strand at 2739.148 kb on + strand, within RR42_RS32735 at 2739.154 kb on + strand, within RR42_RS32735 at 2739.170 kb on - strand, within RR42_RS32735 at 2739.631 kb on - strand, within RR42_RS32735 at 2740.523 kb on + strand at 2740.524 kb on - strand at 2741.106 kb on - strand, within RR42_RS32740 at 2741.413 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 2,737,531 + RR42_RS32730 0.48 +1.3 2,737,531 + RR42_RS32730 0.48 -1.0 2,737,532 - RR42_RS32730 0.48 -2.1 2,737,603 - RR42_RS32730 0.52 +0.8 2,737,603 - RR42_RS32730 0.52 +1.9 2,737,622 + RR42_RS32730 0.53 -1.5 2,737,639 + RR42_RS32730 0.54 +0.6 2,737,639 + RR42_RS32730 0.54 -0.7 2,737,640 - RR42_RS32730 0.54 +3.6 2,737,663 + RR42_RS32730 0.56 +0.2 2,737,663 + RR42_RS32730 0.56 -0.1 2,737,663 + RR42_RS32730 0.56 -0.3 2,737,664 - RR42_RS32730 0.56 -2.2 2,738,345 - -1.1 2,738,350 + +1.4 2,738,351 - -1.3 2,738,360 - -0.7 2,738,433 + +0.5 2,739,148 + RR42_RS32735 0.33 +1.9 2,739,154 + RR42_RS32735 0.33 +0.4 2,739,170 - RR42_RS32735 0.34 -1.6 2,739,631 - RR42_RS32735 0.57 +1.6 2,740,523 + +0.3 2,740,524 - +2.2 2,741,106 - RR42_RS32740 0.68 -3.7 2,741,413 - -2.1
Or see this region's nucleotide sequence