Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS32675 and RR42_RS32680 are separated by 84 nucleotides RR42_RS32680 and RR42_RS32685 are separated by 10 nucleotides
RR42_RS32675: RR42_RS32675 - phenol 2-monooxygenase, at 2,725,847 to 2,727,361
_RS32675
RR42_RS32680: RR42_RS32680 - monooxygenase, at 2,727,446 to 2,727,718
_RS32680
RR42_RS32685: RR42_RS32685 - phenol hydroxylase, at 2,727,729 to 2,728,724
_RS32685
Position (kb)
2727
2728 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 2726.520 kb on + strand, within RR42_RS32675 at 2726.521 kb on - strand, within RR42_RS32675 at 2726.521 kb on - strand, within RR42_RS32675 at 2726.545 kb on + strand, within RR42_RS32675 at 2726.545 kb on + strand, within RR42_RS32675 at 2726.546 kb on - strand, within RR42_RS32675 at 2726.656 kb on + strand, within RR42_RS32675 at 2726.657 kb on - strand, within RR42_RS32675 at 2726.766 kb on + strand, within RR42_RS32675 at 2726.854 kb on - strand, within RR42_RS32675 at 2726.872 kb on + strand, within RR42_RS32675 at 2726.872 kb on + strand, within RR42_RS32675 at 2726.872 kb on + strand, within RR42_RS32675 at 2726.873 kb on - strand, within RR42_RS32675 at 2726.873 kb on - strand, within RR42_RS32675 at 2726.901 kb on + strand, within RR42_RS32675 at 2726.901 kb on + strand, within RR42_RS32675 at 2727.021 kb on + strand, within RR42_RS32675 at 2727.175 kb on - strand, within RR42_RS32675 at 2727.175 kb on - strand, within RR42_RS32675 at 2727.249 kb on + strand at 2727.250 kb on - strand at 2727.250 kb on - strand at 2727.285 kb on + strand at 2727.285 kb on + strand at 2727.324 kb on + strand at 2727.418 kb on - strand at 2727.700 kb on + strand at 2728.229 kb on - strand, within RR42_RS32685 at 2728.261 kb on + strand, within RR42_RS32685 at 2728.474 kb on + strand, within RR42_RS32685 at 2728.489 kb on + strand, within RR42_RS32685 at 2728.552 kb on + strand, within RR42_RS32685 at 2728.615 kb on + strand, within RR42_RS32685 at 2728.616 kb on - strand, within RR42_RS32685 at 2728.676 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 2,726,520 + RR42_RS32675 0.44 +1.5 2,726,521 - RR42_RS32675 0.44 +0.0 2,726,521 - RR42_RS32675 0.44 +0.5 2,726,545 + RR42_RS32675 0.46 -3.5 2,726,545 + RR42_RS32675 0.46 -3.9 2,726,546 - RR42_RS32675 0.46 +0.0 2,726,656 + RR42_RS32675 0.53 +0.1 2,726,657 - RR42_RS32675 0.53 +0.9 2,726,766 + RR42_RS32675 0.61 -1.3 2,726,854 - RR42_RS32675 0.66 +1.3 2,726,872 + RR42_RS32675 0.68 -1.1 2,726,872 + RR42_RS32675 0.68 -1.3 2,726,872 + RR42_RS32675 0.68 +1.8 2,726,873 - RR42_RS32675 0.68 -2.4 2,726,873 - RR42_RS32675 0.68 +0.0 2,726,901 + RR42_RS32675 0.70 +1.7 2,726,901 + RR42_RS32675 0.70 -3.3 2,727,021 + RR42_RS32675 0.77 +0.9 2,727,175 - RR42_RS32675 0.88 +1.4 2,727,175 - RR42_RS32675 0.88 -0.1 2,727,249 + -0.8 2,727,250 - -1.0 2,727,250 - +0.3 2,727,285 + +0.4 2,727,285 + +1.3 2,727,324 + -1.7 2,727,418 - +0.1 2,727,700 + +2.3 2,728,229 - RR42_RS32685 0.50 +0.9 2,728,261 + RR42_RS32685 0.53 -0.1 2,728,474 + RR42_RS32685 0.75 +1.2 2,728,489 + RR42_RS32685 0.76 -0.0 2,728,552 + RR42_RS32685 0.83 +0.3 2,728,615 + RR42_RS32685 0.89 +2.3 2,728,616 - RR42_RS32685 0.89 +0.4 2,728,676 - -1.9
Or see this region's nucleotide sequence