Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS32670
Experiment: LB
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | LB |
---|---|---|---|---|---|
remove | |||||
2,724,518 | - | RR42_RS32665 | 0.14 | -1.4 | |
2,724,560 | - | RR42_RS32665 | 0.18 | -1.8 | |
2,724,643 | + | RR42_RS32665 | 0.25 | -1.4 | |
2,724,694 | + | RR42_RS32665 | 0.30 | +0.9 | |
2,724,694 | + | RR42_RS32665 | 0.30 | +1.9 | |
2,724,695 | - | RR42_RS32665 | 0.30 | -0.4 | |
2,724,856 | + | RR42_RS32665 | 0.45 | +1.2 | |
2,725,028 | - | RR42_RS32665 | 0.61 | -3.7 | |
2,725,456 | + | +0.8 | |||
2,725,624 | + | RR42_RS32670 | 0.47 | +1.4 | |
2,725,631 | - | RR42_RS32670 | 0.49 | +2.2 | |
2,725,836 | - | +1.0 | |||
2,725,951 | + | +2.3 | |||
2,725,951 | + | -1.7 | |||
2,725,952 | - | -0.6 | |||
2,725,952 | - | +0.9 | |||
2,725,992 | + | -2.1 | |||
2,725,993 | - | +1.1 | |||
2,726,095 | - | RR42_RS32675 | 0.16 | +0.1 | |
2,726,095 | - | RR42_RS32675 | 0.16 | -2.6 | |
2,726,340 | + | RR42_RS32675 | 0.33 | -2.3 | |
2,726,341 | - | RR42_RS32675 | 0.33 | -1.3 | |
2,726,520 | + | RR42_RS32675 | 0.44 | +1.5 | |
2,726,521 | - | RR42_RS32675 | 0.44 | +0.0 | |
2,726,521 | - | RR42_RS32675 | 0.44 | +0.5 | |
2,726,545 | + | RR42_RS32675 | 0.46 | -3.5 | |
2,726,545 | + | RR42_RS32675 | 0.46 | -3.9 | |
2,726,546 | - | RR42_RS32675 | 0.46 | +0.0 | |
2,726,656 | + | RR42_RS32675 | 0.53 | +0.1 | |
2,726,657 | - | RR42_RS32675 | 0.53 | +0.9 | |
2,726,766 | + | RR42_RS32675 | 0.61 | -1.3 |
Or see this region's nucleotide sequence