Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS32600
Experiment: LB
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | LB |
---|---|---|---|---|---|
remove | |||||
2,708,833 | + | RR42_RS32595 | 0.53 | -0.2 | |
2,708,909 | - | RR42_RS32595 | 0.56 | -3.0 | |
2,708,947 | + | RR42_RS32595 | 0.58 | -1.6 | |
2,708,947 | + | RR42_RS32595 | 0.58 | -4.9 | |
2,708,948 | - | RR42_RS32595 | 0.58 | -2.8 | |
2,709,203 | - | RR42_RS32595 | 0.71 | -1.3 | |
2,709,229 | + | RR42_RS32595 | 0.73 | -1.6 | |
2,709,475 | + | RR42_RS32595 | 0.85 | -4.8 | |
2,709,589 | + | -0.4 | |||
2,709,590 | - | -2.8 | |||
2,709,662 | - | -2.4 | |||
2,709,775 | - | -2.0 | |||
2,709,915 | + | RR42_RS32600 | 0.14 | -2.8 | |
2,709,916 | - | RR42_RS32600 | 0.14 | -1.4 | |
2,709,937 | - | RR42_RS32600 | 0.16 | -1.5 | |
2,710,200 | + | RR42_RS32600 | 0.43 | -1.3 | |
2,710,200 | + | RR42_RS32600 | 0.43 | +0.9 | |
2,710,201 | - | RR42_RS32600 | 0.44 | -2.4 | |
2,710,739 | + | -1.7 | |||
2,711,317 | + | +1.6 | |||
2,711,331 | - | +2.3 | |||
2,711,382 | - | -3.8 | |||
2,711,382 | - | +0.5 | |||
2,711,740 | + | RR42_RS32605 | 0.32 | +0.3 | |
2,711,740 | + | RR42_RS32605 | 0.32 | +1.1 | |
2,711,740 | + | RR42_RS32605 | 0.32 | +1.6 |
Or see this region's nucleotide sequence