Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS32080 and RR42_RS32085 overlap by 4 nucleotides RR42_RS32085 and RR42_RS32090 are separated by 2 nucleotides
RR42_RS32080: RR42_RS32080 - filamentous hemagglutinin adhesin, at 2,574,397 to 2,582,430
_RS32080
RR42_RS32085: RR42_RS32085 - hypothetical protein, at 2,582,427 to 2,582,681
_RS32085
RR42_RS32090: RR42_RS32090 - hypothetical protein, at 2,582,684 to 2,582,902
_RS32090
Position (kb)
2582
2583 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 2581.653 kb on + strand at 2581.744 kb on + strand at 2581.745 kb on - strand at 2581.745 kb on - strand at 2581.801 kb on + strand at 2581.802 kb on - strand at 2581.805 kb on + strand at 2581.805 kb on + strand at 2581.805 kb on + strand at 2581.805 kb on + strand at 2581.805 kb on + strand at 2581.806 kb on - strand at 2581.806 kb on - strand at 2581.806 kb on - strand at 2581.806 kb on - strand at 2581.806 kb on - strand at 2581.815 kb on - strand at 2581.829 kb on + strand at 2581.856 kb on + strand at 2581.856 kb on + strand at 2581.856 kb on + strand at 2581.958 kb on + strand at 2582.004 kb on + strand at 2582.005 kb on - strand at 2582.009 kb on + strand at 2582.009 kb on + strand at 2582.268 kb on + strand at 2582.486 kb on - strand, within RR42_RS32085 at 2582.690 kb on - strand at 2582.854 kb on - strand, within RR42_RS32090 at 2582.854 kb on - strand, within RR42_RS32090 at 2582.939 kb on + strand at 2582.940 kb on - strand at 2582.948 kb on + strand at 2582.948 kb on + strand at 2582.949 kb on - strand at 2582.949 kb on - strand at 2582.950 kb on + strand at 2582.984 kb on + strand at 2582.984 kb on + strand at 2582.984 kb on + strand at 2582.984 kb on + strand at 2583.017 kb on + strand at 2583.017 kb on + strand at 2583.017 kb on + strand at 2583.018 kb on - strand at 2583.049 kb on + strand at 2583.050 kb on - strand at 2583.120 kb on + strand at 2583.120 kb on + strand at 2583.120 kb on + strand at 2583.120 kb on + strand at 2583.120 kb on + strand at 2583.121 kb on - strand at 2583.121 kb on - strand at 2583.121 kb on - strand at 2583.121 kb on - strand at 2583.195 kb on + strand at 2583.226 kb on + strand at 2583.436 kb on - strand at 2583.436 kb on - strand at 2583.436 kb on - strand at 2583.459 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 2,581,653 + -3.7 2,581,744 + -0.2 2,581,745 - -0.5 2,581,745 - +1.7 2,581,801 + -1.0 2,581,802 - -1.9 2,581,805 + -2.1 2,581,805 + -0.2 2,581,805 + +1.7 2,581,805 + +0.6 2,581,805 + +0.4 2,581,806 - +1.4 2,581,806 - +0.7 2,581,806 - -0.6 2,581,806 - -4.0 2,581,806 - +0.3 2,581,815 - +2.8 2,581,829 + +1.8 2,581,856 + +1.0 2,581,856 + -0.5 2,581,856 + +1.3 2,581,958 + +1.4 2,582,004 + +2.0 2,582,005 - +1.5 2,582,009 + -1.9 2,582,009 + +1.3 2,582,268 + -3.1 2,582,486 - RR42_RS32085 0.23 -0.1 2,582,690 - +1.5 2,582,854 - RR42_RS32090 0.78 -1.1 2,582,854 - RR42_RS32090 0.78 -2.7 2,582,939 + +0.4 2,582,940 - +1.8 2,582,948 + -3.4 2,582,948 + -4.5 2,582,949 - +1.2 2,582,949 - +1.0 2,582,950 + -1.0 2,582,984 + -3.5 2,582,984 + +1.1 2,582,984 + +1.1 2,582,984 + +0.8 2,583,017 + -1.0 2,583,017 + -4.2 2,583,017 + -1.6 2,583,018 - +0.6 2,583,049 + +0.1 2,583,050 - -4.1 2,583,120 + -1.3 2,583,120 + -2.7 2,583,120 + -0.4 2,583,120 + +1.6 2,583,120 + -0.2 2,583,121 - -1.2 2,583,121 - +1.1 2,583,121 - -0.0 2,583,121 - +0.5 2,583,195 + +0.3 2,583,226 + +2.6 2,583,436 - +1.2 2,583,436 - -0.4 2,583,436 - -0.1 2,583,459 + -0.1
Or see this region's nucleotide sequence