Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS32080

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
2,573,479	+		RR42_RS32075	0.60	-2.1
2,573,479	+		RR42_RS32075	0.60	+0.8
2,573,635	+		RR42_RS32075	0.71	-2.6
2,574,131	-				+0.6
2,574,337	+				+2.3
2,574,409	-				-0.3
2,574,563	+				-0.8
2,574,564	-				+2.1
2,574,770	-				-3.4
2,574,802	-				-1.3
2,575,309	+		RR42_RS32080	0.11	-0.6
2,575,310	-		RR42_RS32080	0.11	+1.6
2,575,310	-		RR42_RS32080	0.11	-1.2
2,575,310	-		RR42_RS32080	0.11	-2.1
2,575,423	-		RR42_RS32080	0.13	+0.6
2,575,787	-		RR42_RS32080	0.17	-0.1
2,576,382	-		RR42_RS32080	0.25	+0.1
2,576,628	+		RR42_RS32080	0.28	-2.2
2,576,900	-		RR42_RS32080	0.31	-2.0
2,577,120	+		RR42_RS32080	0.34	-3.1
2,577,121	-		RR42_RS32080	0.34	-0.5
2,577,213	+		RR42_RS32080	0.35	+1.4
2,577,242	-		RR42_RS32080	0.35	+0.1
2,577,242	-		RR42_RS32080	0.35	-2.2
2,577,320	+		RR42_RS32080	0.36	+1.4
2,577,320	+		RR42_RS32080	0.36	-0.1
2,577,321	-		RR42_RS32080	0.36	+0.2
2,577,322	+		RR42_RS32080	0.36	-0.5
2,577,322	+		RR42_RS32080	0.36	+0.8
2,577,322	+		RR42_RS32080	0.36	-2.2
2,577,323	-		RR42_RS32080	0.36	-0.7
2,577,323	-		RR42_RS32080	0.36	+0.1
2,577,323	-		RR42_RS32080	0.36	+1.8
2,577,359	-		RR42_RS32080	0.37	-0.7
2,577,359	-		RR42_RS32080	0.37	+1.2
2,577,377	-		RR42_RS32080	0.37	-2.6
2,577,703	+		RR42_RS32080	0.41	+2.7
2,577,704	-		RR42_RS32080	0.41	-2.1
2,577,736	+		RR42_RS32080	0.42	-1.0
2,577,778	+		RR42_RS32080	0.42	-1.3
2,577,779	-		RR42_RS32080	0.42	-0.6
2,577,996	-		RR42_RS32080	0.45	+0.5
2,578,028	-		RR42_RS32080	0.45	+0.7
2,578,028	-		RR42_RS32080	0.45	+2.5
2,578,057	+		RR42_RS32080	0.46	+0.3
2,578,058	-		RR42_RS32080	0.46	-0.2
2,578,450	+		RR42_RS32080	0.50	+0.2
2,578,453	+		RR42_RS32080	0.50	-2.2
2,578,453	+		RR42_RS32080	0.50	+0.4
2,578,453	+		RR42_RS32080	0.50	-1.7
2,578,454	-		RR42_RS32080	0.50	-3.3
2,578,454	-		RR42_RS32080	0.50	-0.3
2,578,517	-		RR42_RS32080	0.51	-2.1
2,578,537	+		RR42_RS32080	0.52	-2.0
2,578,538	-		RR42_RS32080	0.52	-0.2
2,578,538	-		RR42_RS32080	0.52	-0.0
2,578,852	-		RR42_RS32080	0.55	-0.9
2,579,200	+		RR42_RS32080	0.60	-0.4
2,579,317	+		RR42_RS32080	0.61	+0.4
2,579,318	-		RR42_RS32080	0.61	-1.8
2,579,413	+		RR42_RS32080	0.62	+1.4
2,579,413	+		RR42_RS32080	0.62	-2.9
2,579,638	+		RR42_RS32080	0.65	-2.1
2,579,638	+		RR42_RS32080	0.65	+0.0
2,579,639	-		RR42_RS32080	0.65	+1.2
2,579,639	-		RR42_RS32080	0.65	-2.8
2,579,639	-		RR42_RS32080	0.65	-1.7
2,579,690	-		RR42_RS32080	0.66	-1.0
2,580,316	-		RR42_RS32080	0.74	-0.4
2,580,322	-		RR42_RS32080	0.74	-2.2
2,580,389	+		RR42_RS32080	0.75	+1.6
2,580,389	+		RR42_RS32080	0.75	-2.2
2,580,394	+		RR42_RS32080	0.75	+0.5
2,580,653	+		RR42_RS32080	0.78	+1.5
2,580,653	+		RR42_RS32080	0.78	+1.7
2,581,184	+		RR42_RS32080	0.84	+1.8
2,581,239	-		RR42_RS32080	0.85	+0.7
2,581,653	+				-3.7
2,581,744	+				-0.2
2,581,745	-				-0.5
2,581,745	-				+1.7
2,581,801	+				-1.0
2,581,802	-				-1.9
2,581,805	+				-2.1
2,581,805	+				-0.2
2,581,805	+				+1.7
2,581,805	+				+0.6
2,581,805	+				+0.4
2,581,806	-				+1.4
2,581,806	-				+0.7
2,581,806	-				-0.6
2,581,806	-				-4.0
2,581,806	-				+0.3
2,581,815	-				+2.8
2,581,829	+				+1.8
2,581,856	+				+1.0
2,581,856	+				-0.5
2,581,856	+				+1.3
2,581,958	+				+1.4
2,582,004	+				+2.0
2,582,005	-				+1.5
2,582,009	+				-1.9
2,582,009	+				+1.3
2,582,268	+				-3.1
2,582,486	-		RR42_RS32085	0.23	-0.1
2,582,690	-				+1.5
2,582,854	-		RR42_RS32090	0.78	-1.1
2,582,854	-		RR42_RS32090	0.78	-2.7
2,582,939	+				+0.4
2,582,940	-				+1.8
2,582,948	+				-3.4
2,582,948	+				-4.5
2,582,949	-				+1.2
2,582,949	-				+1.0
2,582,950	+				-1.0
2,582,984	+				-3.5
2,582,984	+				+1.1
2,582,984	+				+1.1
2,582,984	+				+0.8
2,583,017	+				-1.0
2,583,017	+				-4.2
2,583,017	+				-1.6
2,583,018	-				+0.6
2,583,049	+				+0.1
2,583,050	-				-4.1
2,583,120	+				-1.3
2,583,120	+				-2.7
2,583,120	+				-0.4
2,583,120	+				+1.6
2,583,120	+				-0.2
2,583,121	-				-1.2
2,583,121	-				+1.1
2,583,121	-				-0.0
2,583,121	-				+0.5
2,583,195	+				+0.3
2,583,226	+				+2.6