Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS31995
Experiment: LB
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | LB |
---|---|---|---|---|---|
remove | |||||
2,555,370 | + | RR42_RS31990 | 0.50 | +2.2 | |
2,555,410 | + | RR42_RS31990 | 0.52 | -2.9 | |
2,555,411 | - | RR42_RS31990 | 0.52 | -0.5 | |
2,555,808 | + | RR42_RS31990 | 0.76 | +1.8 | |
2,555,812 | - | RR42_RS31990 | 0.76 | +1.2 | |
2,555,817 | + | RR42_RS31990 | 0.76 | -0.3 | |
2,555,818 | - | RR42_RS31990 | 0.76 | -1.0 | |
2,555,818 | - | RR42_RS31990 | 0.76 | -3.4 | |
2,555,974 | - | RR42_RS31990 | 0.85 | -2.2 | |
2,556,043 | - | RR42_RS31990 | 0.89 | +0.0 | |
2,556,378 | + | RR42_RS31995 | 0.11 | -0.6 | |
2,556,378 | + | RR42_RS31995 | 0.11 | -3.7 | |
2,556,545 | - | RR42_RS31995 | 0.43 | +0.4 | |
2,556,805 | + | -3.9 | |||
2,556,806 | - | +0.4 | |||
2,556,829 | + | -1.6 | |||
2,556,830 | - | +1.4 | |||
2,556,858 | - | +1.6 | |||
2,556,858 | - | +0.5 | |||
2,556,858 | - | +2.6 | |||
2,556,858 | - | +0.8 | |||
2,557,211 | - | RR42_RS32000 | 0.18 | -1.2 | |
2,557,211 | - | RR42_RS32000 | 0.18 | -4.4 | |
2,557,214 | + | RR42_RS32000 | 0.18 | -3.5 | |
2,557,215 | - | RR42_RS32000 | 0.18 | -1.8 | |
2,557,502 | - | RR42_RS32000 | 0.35 | -4.5 | |
2,557,526 | - | RR42_RS32000 | 0.36 | -3.3 | |
2,557,766 | - | RR42_RS32000 | 0.50 | -3.8 |
Or see this region's nucleotide sequence