Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS31930

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS31925 and RR42_RS31930 are separated by 54 nucleotidesRR42_RS31930 and RR42_RS31935 are separated by 9 nucleotidesRR42_RS31935 and RR42_RS31940 are separated by 45 nucleotides RR42_RS31925: RR42_RS31925 - acyl-CoA dehydrogenase, at 2,539,681 to 2,540,751 _RS31925 RR42_RS31930: RR42_RS31930 - acyl-CoA dehydrogenase, at 2,540,806 to 2,541,975 _RS31930 RR42_RS31935: RR42_RS31935 - enoyl-CoA hydratase, at 2,541,985 to 2,542,770 _RS31935 RR42_RS31940: RR42_RS31940 - 2-nitropropane dioxygenase, at 2,542,816 to 2,543,925 _RS31940 Position (kb) 2540 2541 2542Strain fitness (log2 ratio) -2 -1 0 1 2at 2540.874 kb on - strandat 2541.051 kb on + strand, within RR42_RS31930at 2541.086 kb on + strand, within RR42_RS31930at 2541.527 kb on + strand, within RR42_RS31930at 2541.528 kb on - strand, within RR42_RS31930at 2541.740 kb on + strand, within RR42_RS31930at 2541.741 kb on - strand, within RR42_RS31930at 2541.741 kb on - strand, within RR42_RS31930at 2541.962 kb on + strandat 2542.074 kb on + strand, within RR42_RS31935at 2542.075 kb on - strand, within RR42_RS31935at 2542.077 kb on - strand, within RR42_RS31935at 2542.110 kb on - strand, within RR42_RS31935at 2542.302 kb on - strand, within RR42_RS31935at 2542.302 kb on - strand, within RR42_RS31935at 2542.416 kb on + strand, within RR42_RS31935at 2542.517 kb on + strand, within RR42_RS31935at 2542.518 kb on - strand, within RR42_RS31935at 2542.775 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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2,540,874 - +1.3
2,541,051 + RR42_RS31930 0.21 +0.5
2,541,086 + RR42_RS31930 0.24 +0.9
2,541,527 + RR42_RS31930 0.62 +1.0
2,541,528 - RR42_RS31930 0.62 -0.1
2,541,740 + RR42_RS31930 0.80 +1.4
2,541,741 - RR42_RS31930 0.80 +1.8
2,541,741 - RR42_RS31930 0.80 +0.3
2,541,962 + -0.4
2,542,074 + RR42_RS31935 0.11 +1.0
2,542,075 - RR42_RS31935 0.11 -2.7
2,542,077 - RR42_RS31935 0.12 +0.1
2,542,110 - RR42_RS31935 0.16 -0.7
2,542,302 - RR42_RS31935 0.40 +1.4
2,542,302 - RR42_RS31935 0.40 +1.6
2,542,416 + RR42_RS31935 0.55 +1.2
2,542,517 + RR42_RS31935 0.68 +0.4
2,542,518 - RR42_RS31935 0.68 -0.7
2,542,775 - +2.1

Or see this region's nucleotide sequence