Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS31750 and RR42_RS31755 are separated by 293 nucleotides RR42_RS31755 and RR42_RS31760 are separated by 208 nucleotides
RR42_RS31750: RR42_RS31750 - IclR family transcriptional regulator, at 2,499,279 to 2,500,046
_RS31750
RR42_RS31755: RR42_RS31755 - short-chain dehydrogenase, at 2,500,340 to 2,501,056
_RS31755
RR42_RS31760: RR42_RS31760 - IclR family transcriptional regulator, at 2,501,265 to 2,503,364
_RS31760
Position (kb)
2500
2501
2502 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 2499.479 kb on - strand, within RR42_RS31750 at 2499.724 kb on - strand, within RR42_RS31750 at 2499.838 kb on + strand, within RR42_RS31750 at 2499.838 kb on + strand, within RR42_RS31750 at 2500.012 kb on + strand at 2500.078 kb on - strand at 2500.099 kb on - strand at 2500.128 kb on + strand at 2500.129 kb on - strand at 2500.129 kb on - strand at 2500.129 kb on - strand at 2500.129 kb on - strand at 2500.195 kb on + strand at 2500.195 kb on + strand at 2500.195 kb on + strand at 2500.195 kb on + strand at 2500.195 kb on + strand at 2500.195 kb on + strand at 2500.196 kb on - strand at 2500.196 kb on - strand at 2500.196 kb on - strand at 2500.229 kb on + strand at 2500.294 kb on + strand at 2500.295 kb on - strand at 2500.296 kb on + strand at 2500.296 kb on + strand at 2500.296 kb on + strand at 2501.087 kb on - strand at 2501.095 kb on + strand at 2501.187 kb on - strand at 2501.225 kb on - strand at 2501.719 kb on + strand, within RR42_RS31760 at 2501.719 kb on + strand, within RR42_RS31760 at 2501.756 kb on + strand, within RR42_RS31760 at 2501.809 kb on + strand, within RR42_RS31760 at 2501.817 kb on + strand, within RR42_RS31760 at 2501.817 kb on + strand, within RR42_RS31760 at 2501.818 kb on - strand, within RR42_RS31760 at 2501.926 kb on - strand, within RR42_RS31760 at 2501.926 kb on - strand, within RR42_RS31760 at 2501.926 kb on - strand, within RR42_RS31760 at 2501.932 kb on - strand, within RR42_RS31760 at 2501.932 kb on - strand, within RR42_RS31760 at 2501.932 kb on - strand, within RR42_RS31760 at 2501.946 kb on + strand, within RR42_RS31760 at 2501.949 kb on - strand, within RR42_RS31760 at 2502.024 kb on + strand, within RR42_RS31760 at 2502.025 kb on - strand, within RR42_RS31760
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 2,499,479 - RR42_RS31750 0.26 +2.3 2,499,724 - RR42_RS31750 0.58 -4.4 2,499,838 + RR42_RS31750 0.73 +0.0 2,499,838 + RR42_RS31750 0.73 -2.6 2,500,012 + -1.4 2,500,078 - +0.4 2,500,099 - -1.5 2,500,128 + -0.1 2,500,129 - -0.5 2,500,129 - +0.6 2,500,129 - -1.0 2,500,129 - -1.8 2,500,195 + +1.4 2,500,195 + -0.5 2,500,195 + -2.7 2,500,195 + -2.1 2,500,195 + +1.2 2,500,195 + +1.1 2,500,196 - +2.7 2,500,196 - -0.3 2,500,196 - +0.4 2,500,229 + +0.7 2,500,294 + +0.8 2,500,295 - -2.0 2,500,296 + +0.2 2,500,296 + -0.8 2,500,296 + +0.9 2,501,087 - +2.0 2,501,095 + +0.1 2,501,187 - -0.0 2,501,225 - +0.4 2,501,719 + RR42_RS31760 0.22 +0.3 2,501,719 + RR42_RS31760 0.22 -0.2 2,501,756 + RR42_RS31760 0.23 -3.9 2,501,809 + RR42_RS31760 0.26 -2.4 2,501,817 + RR42_RS31760 0.26 -2.7 2,501,817 + RR42_RS31760 0.26 +2.1 2,501,818 - RR42_RS31760 0.26 -0.9 2,501,926 - RR42_RS31760 0.31 +2.0 2,501,926 - RR42_RS31760 0.31 -0.1 2,501,926 - RR42_RS31760 0.31 -0.1 2,501,932 - RR42_RS31760 0.32 +0.1 2,501,932 - RR42_RS31760 0.32 -3.6 2,501,932 - RR42_RS31760 0.32 +1.6 2,501,946 + RR42_RS31760 0.32 -0.8 2,501,949 - RR42_RS31760 0.33 +0.6 2,502,024 + RR42_RS31760 0.36 -3.4 2,502,025 - RR42_RS31760 0.36 -2.2
Or see this region's nucleotide sequence