Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS31535
Experiment: LB
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | LB |
---|---|---|---|---|---|
remove | |||||
2,452,475 | - | RR42_RS31530 | 0.61 | +3.5 | |
2,452,619 | + | RR42_RS31530 | 0.71 | +0.8 | |
2,452,960 | + | +1.0 | |||
2,452,961 | - | -0.0 | |||
2,453,583 | + | RR42_RS31535 | 0.80 | -2.4 | |
2,453,584 | - | RR42_RS31535 | 0.80 | +2.2 | |
2,453,584 | - | RR42_RS31535 | 0.80 | +2.0 | |
2,453,584 | - | RR42_RS31535 | 0.80 | +0.2 | |
2,453,674 | - | -2.1 | |||
2,453,811 | + | -0.6 | |||
2,453,853 | + | +0.5 | |||
2,453,853 | + | +2.1 | |||
2,453,854 | - | -3.3 | |||
2,453,854 | - | +0.2 | |||
2,453,968 | + | +1.5 | |||
2,454,039 | + | -0.6 | |||
2,454,086 | - | +0.9 | |||
2,454,328 | + | RR42_RS31540 | 0.12 | +1.1 | |
2,454,329 | - | RR42_RS31540 | 0.12 | +0.4 | |
2,454,398 | - | RR42_RS31540 | 0.14 | -0.6 | |
2,454,697 | + | RR42_RS31540 | 0.23 | +0.5 | |
2,454,697 | + | RR42_RS31540 | 0.23 | -0.4 | |
2,454,697 | + | RR42_RS31540 | 0.23 | -0.8 | |
2,454,697 | + | RR42_RS31540 | 0.23 | -4.5 | |
2,454,698 | - | RR42_RS31540 | 0.24 | +1.6 | |
2,454,698 | - | RR42_RS31540 | 0.24 | +0.7 |
Or see this region's nucleotide sequence