Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS31240 and RR42_RS31245 overlap by 8 nucleotides RR42_RS31245 and RR42_RS31250 are separated by 6 nucleotides RR42_RS31250 and RR42_RS31255 are separated by 87 nucleotides RR42_RS31255 and RR42_RS31260 overlap by 14 nucleotides
RR42_RS31240: RR42_RS31240 - AMP-dependent synthetase, at 2,385,100 to 2,386,818
_RS31240
RR42_RS31245: RR42_RS31245 - membrane protein, at 2,386,811 to 2,387,359
_RS31245
RR42_RS31250: RR42_RS31250 - acyl carrier protein, at 2,387,366 to 2,387,623
_RS31250
RR42_RS31255: RR42_RS31255 - acyl carrier protein, at 2,387,711 to 2,387,986
_RS31255
RR42_RS31260: RR42_RS31260 - acyltransferase, at 2,387,973 to 2,388,749
_RS31260
Position (kb)
2386
2387
2388 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 2386.274 kb on + strand, within RR42_RS31240 at 2386.275 kb on - strand, within RR42_RS31240 at 2386.275 kb on - strand, within RR42_RS31240 at 2386.275 kb on - strand, within RR42_RS31240 at 2386.420 kb on - strand, within RR42_RS31240 at 2386.653 kb on - strand at 2386.836 kb on - strand at 2386.887 kb on + strand, within RR42_RS31245 at 2386.905 kb on + strand, within RR42_RS31245 at 2387.301 kb on + strand, within RR42_RS31245 at 2387.301 kb on + strand, within RR42_RS31245 at 2387.317 kb on - strand at 2387.681 kb on - strand at 2387.681 kb on - strand at 2387.681 kb on - strand at 2388.016 kb on - strand at 2388.109 kb on + strand, within RR42_RS31260 at 2388.109 kb on + strand, within RR42_RS31260 at 2388.110 kb on - strand, within RR42_RS31260 at 2388.110 kb on - strand, within RR42_RS31260 at 2388.110 kb on - strand, within RR42_RS31260 at 2388.110 kb on - strand, within RR42_RS31260 at 2388.358 kb on + strand, within RR42_RS31260 at 2388.359 kb on - strand, within RR42_RS31260
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 2,386,274 + RR42_RS31240 0.68 -0.2 2,386,275 - RR42_RS31240 0.68 +0.4 2,386,275 - RR42_RS31240 0.68 +0.8 2,386,275 - RR42_RS31240 0.68 +1.5 2,386,420 - RR42_RS31240 0.77 -1.0 2,386,653 - +0.7 2,386,836 - -1.3 2,386,887 + RR42_RS31245 0.14 -1.6 2,386,905 + RR42_RS31245 0.17 -0.2 2,387,301 + RR42_RS31245 0.89 +0.2 2,387,301 + RR42_RS31245 0.89 +0.3 2,387,317 - +0.4 2,387,681 - +0.6 2,387,681 - -1.9 2,387,681 - -3.0 2,388,016 - -1.9 2,388,109 + RR42_RS31260 0.18 +1.7 2,388,109 + RR42_RS31260 0.18 +0.0 2,388,110 - RR42_RS31260 0.18 +0.9 2,388,110 - RR42_RS31260 0.18 +1.2 2,388,110 - RR42_RS31260 0.18 -1.1 2,388,110 - RR42_RS31260 0.18 +0.5 2,388,358 + RR42_RS31260 0.50 -4.1 2,388,359 - RR42_RS31260 0.50 +1.1
Or see this region's nucleotide sequence