Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS30085

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS30080 and RR42_RS30085 are separated by 16 nucleotidesRR42_RS30085 and RR42_RS30090 are separated by 475 nucleotides RR42_RS30080: RR42_RS30080 - MFS transporter, at 2,120,319 to 2,121,707 _RS30080 RR42_RS30085: RR42_RS30085 - hypothetical protein, at 2,121,724 to 2,122,089 _RS30085 RR42_RS30090: RR42_RS30090 - MFS transporter, at 2,122,565 to 2,123,836 _RS30090 Position (kb) 2121 2122 2123Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2120.824 kb on - strand, within RR42_RS30080at 2120.824 kb on - strand, within RR42_RS30080at 2120.824 kb on - strand, within RR42_RS30080at 2121.083 kb on - strand, within RR42_RS30080at 2121.105 kb on + strand, within RR42_RS30080at 2121.106 kb on - strand, within RR42_RS30080at 2121.128 kb on + strand, within RR42_RS30080at 2121.141 kb on + strand, within RR42_RS30080at 2121.141 kb on + strand, within RR42_RS30080at 2121.141 kb on + strand, within RR42_RS30080at 2121.229 kb on - strand, within RR42_RS30080at 2121.229 kb on - strand, within RR42_RS30080at 2121.229 kb on - strand, within RR42_RS30080at 2121.278 kb on + strand, within RR42_RS30080at 2121.283 kb on + strand, within RR42_RS30080at 2121.283 kb on + strand, within RR42_RS30080at 2121.283 kb on + strand, within RR42_RS30080at 2121.284 kb on - strand, within RR42_RS30080at 2121.284 kb on - strand, within RR42_RS30080at 2121.284 kb on - strand, within RR42_RS30080at 2121.318 kb on - strand, within RR42_RS30080at 2121.452 kb on - strand, within RR42_RS30080at 2121.524 kb on + strand, within RR42_RS30080at 2121.528 kb on - strand, within RR42_RS30080at 2121.528 kb on - strand, within RR42_RS30080at 2121.620 kb on + strandat 2121.651 kb on + strandat 2121.775 kb on + strand, within RR42_RS30085at 2121.776 kb on - strand, within RR42_RS30085at 2121.940 kb on + strand, within RR42_RS30085at 2121.941 kb on - strand, within RR42_RS30085at 2121.941 kb on - strand, within RR42_RS30085at 2122.083 kb on + strandat 2122.084 kb on - strandat 2122.084 kb on - strandat 2122.084 kb on - strandat 2122.109 kb on - strandat 2122.119 kb on + strandat 2122.119 kb on + strandat 2122.120 kb on - strandat 2122.123 kb on + strandat 2122.162 kb on + strandat 2122.239 kb on - strandat 2122.239 kb on - strandat 2122.374 kb on - strandat 2122.527 kb on - strandat 2122.535 kb on - strandat 2122.861 kb on + strand, within RR42_RS30090at 2123.062 kb on - strand, within RR42_RS30090

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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2,120,824 - RR42_RS30080 0.36 +0.4
2,120,824 - RR42_RS30080 0.36 -3.3
2,120,824 - RR42_RS30080 0.36 +0.0
2,121,083 - RR42_RS30080 0.55 +2.3
2,121,105 + RR42_RS30080 0.57 -0.4
2,121,106 - RR42_RS30080 0.57 +1.5
2,121,128 + RR42_RS30080 0.58 +0.6
2,121,141 + RR42_RS30080 0.59 +2.8
2,121,141 + RR42_RS30080 0.59 -0.9
2,121,141 + RR42_RS30080 0.59 +0.7
2,121,229 - RR42_RS30080 0.66 -0.4
2,121,229 - RR42_RS30080 0.66 -2.5
2,121,229 - RR42_RS30080 0.66 +2.2
2,121,278 + RR42_RS30080 0.69 +2.2
2,121,283 + RR42_RS30080 0.69 -0.5
2,121,283 + RR42_RS30080 0.69 -0.7
2,121,283 + RR42_RS30080 0.69 -3.4
2,121,284 - RR42_RS30080 0.69 +1.4
2,121,284 - RR42_RS30080 0.69 -0.9
2,121,284 - RR42_RS30080 0.69 -0.6
2,121,318 - RR42_RS30080 0.72 -0.2
2,121,452 - RR42_RS30080 0.82 +0.5
2,121,524 + RR42_RS30080 0.87 -0.0
2,121,528 - RR42_RS30080 0.87 +0.5
2,121,528 - RR42_RS30080 0.87 -1.9
2,121,620 + -2.1
2,121,651 + -1.6
2,121,775 + RR42_RS30085 0.14 +0.5
2,121,776 - RR42_RS30085 0.14 -3.1
2,121,940 + RR42_RS30085 0.59 -1.7
2,121,941 - RR42_RS30085 0.59 +0.0
2,121,941 - RR42_RS30085 0.59 +0.4
2,122,083 + +0.4
2,122,084 - -0.2
2,122,084 - -3.2
2,122,084 - +1.5
2,122,109 - -1.1
2,122,119 + +1.2
2,122,119 + +0.7
2,122,120 - +0.7
2,122,123 + -0.4
2,122,162 + -1.5
2,122,239 - +1.5
2,122,239 - -0.6
2,122,374 - +1.7
2,122,527 - -2.3
2,122,535 - +2.0
2,122,861 + RR42_RS30090 0.23 +0.5
2,123,062 - RR42_RS30090 0.39 +0.4

Or see this region's nucleotide sequence