Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS29890

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
2,070,673	-		RR42_RS29885	0.57	+0.4
2,070,730	-		RR42_RS29885	0.61	-0.0
2,070,751	+		RR42_RS29885	0.63	-0.9
2,070,751	+		RR42_RS29885	0.63	-2.5
2,070,751	+		RR42_RS29885	0.63	-3.4
2,070,751	+		RR42_RS29885	0.63	-1.3
2,070,752	-		RR42_RS29885	0.63	+0.4
2,070,752	-		RR42_RS29885	0.63	-1.8
2,070,874	+		RR42_RS29885	0.71	+0.1
2,070,874	+		RR42_RS29885	0.71	+0.8
2,070,877	+		RR42_RS29885	0.71	-3.0
2,070,877	+		RR42_RS29885	0.71	-3.0
2,070,877	+		RR42_RS29885	0.71	-1.7
2,070,878	-		RR42_RS29885	0.71	-0.8
2,070,886	+		RR42_RS29885	0.71	-1.0
2,070,887	-		RR42_RS29885	0.72	+1.8
2,070,887	-		RR42_RS29885	0.72	+1.2
2,070,887	-		RR42_RS29885	0.72	+0.8
2,070,890	+		RR42_RS29885	0.72	-1.6
2,070,922	-		RR42_RS29885	0.74	-0.7
2,070,944	+		RR42_RS29885	0.75	+0.9
2,070,960	+		RR42_RS29885	0.76	-0.2
2,070,961	-		RR42_RS29885	0.76	-0.3
2,071,151	-		RR42_RS29885	0.89	-1.7
2,071,205	+				-0.9
2,071,205	+				+2.0
2,071,205	+				-1.7
2,071,206	-				-1.9
2,071,206	-				-1.1
2,071,230	+				-3.2
2,071,230	+				-1.7
2,071,280	+				-1.1
2,071,280	+				-3.7
2,071,281	-				-2.6
2,071,372	-				-1.9
2,071,400	-				+0.6
2,071,523	+				+0.7
2,071,523	+				-0.6
2,071,523	+				-1.7
2,071,524	-				-3.0
2,071,524	-				-0.4
2,071,526	+				-3.0
2,071,526	+				-1.9
2,071,527	-				-0.5
2,071,527	-				+1.0
2,071,527	-				-0.5
2,071,527	-				-3.5
2,071,571	-				-0.6
2,071,571	-				+0.3
2,071,585	+				+0.4
2,071,586	-				-3.3
2,071,586	-				+1.4
2,071,587	+				+1.1
2,071,587	+				+0.1
2,071,588	-				-1.1
2,071,588	-				+0.3
2,071,588	-				+0.9
2,071,588	-				-0.1
2,071,602	+				-3.0
2,071,679	-				+0.1
2,071,724	+				+0.1
2,071,724	+				+0.8
2,071,724	+				-0.2
2,071,724	+				+1.6
2,071,724	+				-1.9
2,071,725	-				-0.4
2,071,725	-				+1.1
2,071,725	-				+1.1
2,071,729	-				+2.4
2,071,729	-				+0.3
2,071,729	-				-1.9
2,071,764	-		RR42_RS29890	0.13	-3.7
2,071,804	+		RR42_RS29890	0.18	-2.2
2,071,818	-		RR42_RS29890	0.19	-2.4
2,071,852	-		RR42_RS29890	0.23	+0.3
2,071,862	+		RR42_RS29890	0.24	-0.7
2,071,862	+		RR42_RS29890	0.24	-3.4
2,071,863	-		RR42_RS29890	0.24	-1.3
2,071,863	-		RR42_RS29890	0.24	-2.0
2,071,952	+		RR42_RS29890	0.34	+0.4
2,071,952	+		RR42_RS29890	0.34	-4.0
2,071,952	+		RR42_RS29890	0.34	+0.7
2,071,953	-		RR42_RS29890	0.34	+0.1
2,072,020	-		RR42_RS29890	0.42	+1.6
2,072,020	-		RR42_RS29890	0.42	-2.1
2,072,020	-		RR42_RS29890	0.42	-1.6
2,072,020	-		RR42_RS29890	0.42	+0.9
2,072,020	-		RR42_RS29890	0.42	+1.4
2,072,024	-		RR42_RS29890	0.43	+1.4
2,072,083	-		RR42_RS29890	0.49	-0.0
2,072,161	+		RR42_RS29890	0.58	-1.7
2,072,162	-		RR42_RS29890	0.58	+0.1
2,072,178	+		RR42_RS29890	0.60	-4.5
2,072,179	-		RR42_RS29890	0.60	+0.6
2,072,294	+		RR42_RS29890	0.73	-1.7
2,072,294	+		RR42_RS29890	0.73	+0.2
2,072,328	+		RR42_RS29890	0.77	-3.1
2,072,328	+		RR42_RS29890	0.77	-1.0
2,072,432	+		RR42_RS29890	0.89	+0.3
2,072,433	-		RR42_RS29890	0.89	-2.5
2,072,433	-		RR42_RS29890	0.89	+1.6
2,072,433	-		RR42_RS29890	0.89	-0.1
2,072,530	+				-1.5
2,072,531	-				-3.3
2,072,531	-				+0.1
2,072,531	-				+1.0
2,072,553	+				-0.8
2,072,567	-				+2.8
2,072,567	-				+0.5
2,072,592	+				-0.2
2,072,592	+				+0.1
2,072,711	+				+1.5
2,072,711	+				-0.3
2,072,711	+				-0.7
2,072,711	+				-2.0
2,072,711	+				-0.3
2,072,711	+				+0.5
2,072,711	+				-0.4
2,072,711	+				+1.3
2,072,712	-				-1.0
2,072,712	-				-3.2
2,072,712	-				+1.7
2,072,712	-				+0.2
2,072,743	+				-1.7
2,072,743	+				-0.0
2,072,744	-				-1.6
2,072,744	-				+1.9
2,072,744	-				-2.3
2,072,790	-				+0.3
2,072,790	-				+0.0
2,072,858	-				+0.8
2,072,878	+				+0.7
2,072,879	-				-0.5
2,072,934	+				+0.1
2,072,934	+				+1.3
2,072,935	-				-4.3
2,072,939	-				+2.1
2,072,957	+				+0.6
2,072,967	+				-4.6
2,072,971	+				+0.8
2,072,972	-				-0.5
2,072,980	-				-0.9
2,073,172	+		RR42_RS29895	0.11	+1.5
2,073,172	+		RR42_RS29895	0.11	-2.2
2,073,216	+		RR42_RS29895	0.13	-0.2
2,073,216	+		RR42_RS29895	0.13	-0.3
2,073,216	+		RR42_RS29895	0.13	+0.7
2,073,228	+		RR42_RS29895	0.14	-2.1
2,073,229	-		RR42_RS29895	0.14	-2.1
2,073,237	+		RR42_RS29895	0.15	+2.3
2,073,237	+		RR42_RS29895	0.15	+1.1
2,073,238	-		RR42_RS29895	0.15	+0.9
2,073,238	-		RR42_RS29895	0.15	-1.1
2,073,238	-		RR42_RS29895	0.15	+0.7
2,073,309	+		RR42_RS29895	0.19	+1.0
2,073,382	-		RR42_RS29895	0.24	+0.1
2,073,487	+		RR42_RS29895	0.30	-0.3
2,073,487	+		RR42_RS29895	0.30	+2.3
2,073,488	-		RR42_RS29895	0.30	+0.6
2,073,488	-		RR42_RS29895	0.30	+0.4