Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS29195

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS29185 and RR42_RS29190 are separated by 174 nucleotidesRR42_RS29190 and RR42_RS29195 are separated by 50 nucleotidesRR42_RS29195 and RR42_RS29200 are separated by 109 nucleotidesRR42_RS29200 and RR42_RS29205 overlap by 4 nucleotides RR42_RS29185: RR42_RS29185 - potassium transporter Kef, at 1,905,605 to 1,906,075 _RS29185 RR42_RS29190: RR42_RS29190 - isomerase, at 1,906,250 to 1,906,672 _RS29190 RR42_RS29195: RR42_RS29195 - short-chain dehydrogenase, at 1,906,723 to 1,907,508 _RS29195 RR42_RS29200: RR42_RS29200 - lipoprotein, at 1,907,618 to 1,908,157 _RS29200 RR42_RS29205: RR42_RS29205 - hypothetical protein, at 1,908,154 to 1,909,389 _RS29205 Position (kb) 1906 1907 1908Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 1905.798 kb on + strand, within RR42_RS29185at 1905.799 kb on - strand, within RR42_RS29185at 1905.799 kb on - strand, within RR42_RS29185at 1905.799 kb on - strand, within RR42_RS29185at 1905.805 kb on - strand, within RR42_RS29185at 1906.030 kb on + strandat 1906.127 kb on - strandat 1906.234 kb on + strandat 1906.290 kb on - strandat 1906.290 kb on - strandat 1906.344 kb on + strand, within RR42_RS29190at 1906.345 kb on - strand, within RR42_RS29190at 1906.396 kb on + strand, within RR42_RS29190at 1906.410 kb on + strand, within RR42_RS29190at 1906.411 kb on - strand, within RR42_RS29190at 1906.596 kb on + strand, within RR42_RS29190at 1906.597 kb on - strand, within RR42_RS29190at 1906.597 kb on - strand, within RR42_RS29190at 1906.641 kb on + strandat 1906.774 kb on + strandat 1906.953 kb on - strand, within RR42_RS29195at 1906.985 kb on + strand, within RR42_RS29195at 1907.057 kb on + strand, within RR42_RS29195at 1907.057 kb on + strand, within RR42_RS29195at 1907.058 kb on - strand, within RR42_RS29195at 1907.058 kb on - strand, within RR42_RS29195at 1907.135 kb on + strand, within RR42_RS29195at 1907.138 kb on + strand, within RR42_RS29195at 1907.138 kb on + strand, within RR42_RS29195at 1907.139 kb on - strand, within RR42_RS29195at 1907.707 kb on - strand, within RR42_RS29200at 1907.707 kb on - strand, within RR42_RS29200at 1907.707 kb on - strand, within RR42_RS29200at 1907.733 kb on + strand, within RR42_RS29200at 1907.733 kb on + strand, within RR42_RS29200at 1907.734 kb on - strand, within RR42_RS29200at 1907.734 kb on - strand, within RR42_RS29200at 1907.734 kb on - strand, within RR42_RS29200at 1907.734 kb on - strand, within RR42_RS29200at 1907.766 kb on + strand, within RR42_RS29200at 1907.767 kb on - strand, within RR42_RS29200at 1907.899 kb on - strand, within RR42_RS29200at 1907.899 kb on - strand, within RR42_RS29200at 1907.918 kb on + strand, within RR42_RS29200at 1907.954 kb on + strand, within RR42_RS29200at 1908.101 kb on + strand, within RR42_RS29200at 1908.112 kb on - strandat 1908.113 kb on + strandat 1908.113 kb on + strandat 1908.114 kb on - strandat 1908.114 kb on - strandat 1908.293 kb on + strand, within RR42_RS29205at 1908.372 kb on - strand, within RR42_RS29205at 1908.372 kb on - strand, within RR42_RS29205

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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1,905,798 + RR42_RS29185 0.41 +1.8
1,905,799 - RR42_RS29185 0.41 -0.5
1,905,799 - RR42_RS29185 0.41 -0.1
1,905,799 - RR42_RS29185 0.41 +0.2
1,905,805 - RR42_RS29185 0.42 +0.8
1,906,030 + +1.8
1,906,127 - -2.3
1,906,234 + +0.0
1,906,290 - -0.9
1,906,290 - +0.5
1,906,344 + RR42_RS29190 0.22 -1.3
1,906,345 - RR42_RS29190 0.22 -2.4
1,906,396 + RR42_RS29190 0.35 -0.9
1,906,410 + RR42_RS29190 0.38 -3.4
1,906,411 - RR42_RS29190 0.38 +0.0
1,906,596 + RR42_RS29190 0.82 +2.3
1,906,597 - RR42_RS29190 0.82 +2.0
1,906,597 - RR42_RS29190 0.82 +2.1
1,906,641 + +3.4
1,906,774 + +0.4
1,906,953 - RR42_RS29195 0.29 -1.7
1,906,985 + RR42_RS29195 0.33 +2.7
1,907,057 + RR42_RS29195 0.42 +0.7
1,907,057 + RR42_RS29195 0.42 +0.6
1,907,058 - RR42_RS29195 0.43 -2.7
1,907,058 - RR42_RS29195 0.43 +0.7
1,907,135 + RR42_RS29195 0.52 -2.1
1,907,138 + RR42_RS29195 0.53 -3.0
1,907,138 + RR42_RS29195 0.53 -0.2
1,907,139 - RR42_RS29195 0.53 -1.8
1,907,707 - RR42_RS29200 0.16 +1.1
1,907,707 - RR42_RS29200 0.16 +0.3
1,907,707 - RR42_RS29200 0.16 +0.8
1,907,733 + RR42_RS29200 0.21 +0.1
1,907,733 + RR42_RS29200 0.21 +1.3
1,907,734 - RR42_RS29200 0.21 +1.7
1,907,734 - RR42_RS29200 0.21 +0.3
1,907,734 - RR42_RS29200 0.21 -1.0
1,907,734 - RR42_RS29200 0.21 -0.9
1,907,766 + RR42_RS29200 0.27 -1.5
1,907,767 - RR42_RS29200 0.28 +0.9
1,907,899 - RR42_RS29200 0.52 +1.3
1,907,899 - RR42_RS29200 0.52 -3.8
1,907,918 + RR42_RS29200 0.56 +0.4
1,907,954 + RR42_RS29200 0.62 +1.3
1,908,101 + RR42_RS29200 0.89 +0.2
1,908,112 - +1.9
1,908,113 + -0.1
1,908,113 + +0.9
1,908,114 - +1.0
1,908,114 - +1.7
1,908,293 + RR42_RS29205 0.11 -0.7
1,908,372 - RR42_RS29205 0.18 -3.5
1,908,372 - RR42_RS29205 0.18 +0.2

Or see this region's nucleotide sequence