Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS28545

Experiment: LB

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRR42_RS28540 and RR42_RS28545 are separated by 60 nucleotidesRR42_RS28545 and RR42_RS28550 are separated by 10 nucleotidesRR42_RS28550 and RR42_RS28555 overlap by 4 nucleotides RR42_RS28540: RR42_RS28540 - glutamate--pyruvate aminotransferase, at 1,757,844 to 1,759,100 _RS28540 RR42_RS28545: RR42_RS28545 - 3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4) (from data), at 1,759,161 to 1,760,315 _RS28545 RR42_RS28550: RR42_RS28550 - enoyl-CoA hydratase, at 1,760,326 to 1,761,096 _RS28550 RR42_RS28555: RR42_RS28555 - 3-hydroxyisobutyrate dehydrogenase, at 1,761,093 to 1,761,992 _RS28555 Position (kb) 1759 1760 1761Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 1758.238 kb on - strand, within RR42_RS28540at 1758.248 kb on + strand, within RR42_RS28540at 1758.248 kb on + strand, within RR42_RS28540at 1758.248 kb on + strand, within RR42_RS28540at 1758.248 kb on + strand, within RR42_RS28540at 1758.248 kb on + strand, within RR42_RS28540at 1758.249 kb on - strand, within RR42_RS28540at 1758.249 kb on - strand, within RR42_RS28540at 1758.249 kb on - strand, within RR42_RS28540at 1758.252 kb on + strand, within RR42_RS28540at 1758.253 kb on - strand, within RR42_RS28540at 1758.348 kb on + strand, within RR42_RS28540at 1758.349 kb on - strand, within RR42_RS28540at 1758.349 kb on - strand, within RR42_RS28540at 1758.456 kb on - strand, within RR42_RS28540at 1758.456 kb on - strand, within RR42_RS28540at 1758.657 kb on + strand, within RR42_RS28540at 1758.666 kb on + strand, within RR42_RS28540at 1758.667 kb on - strand, within RR42_RS28540at 1758.750 kb on + strand, within RR42_RS28540at 1758.750 kb on + strand, within RR42_RS28540at 1758.828 kb on + strand, within RR42_RS28540at 1758.828 kb on + strand, within RR42_RS28540at 1758.828 kb on + strand, within RR42_RS28540at 1758.828 kb on + strand, within RR42_RS28540at 1758.829 kb on - strand, within RR42_RS28540at 1758.829 kb on - strand, within RR42_RS28540at 1758.831 kb on - strand, within RR42_RS28540at 1758.942 kb on + strand, within RR42_RS28540at 1758.943 kb on - strand, within RR42_RS28540at 1758.954 kb on + strand, within RR42_RS28540at 1759.112 kb on + strandat 1759.112 kb on + strandat 1759.113 kb on - strandat 1759.460 kb on + strand, within RR42_RS28545at 1759.780 kb on + strand, within RR42_RS28545at 1759.780 kb on + strand, within RR42_RS28545at 1759.781 kb on - strand, within RR42_RS28545at 1759.781 kb on - strand, within RR42_RS28545at 1759.781 kb on - strand, within RR42_RS28545at 1759.970 kb on - strand, within RR42_RS28545at 1760.050 kb on + strand, within RR42_RS28545at 1760.051 kb on - strand, within RR42_RS28545at 1760.327 kb on + strandat 1760.328 kb on - strandat 1760.487 kb on - strand, within RR42_RS28550at 1760.793 kb on - strand, within RR42_RS28550at 1760.992 kb on + strand, within RR42_RS28550at 1761.121 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB
remove
1,758,238 - RR42_RS28540 0.31 -0.1
1,758,248 + RR42_RS28540 0.32 -1.7
1,758,248 + RR42_RS28540 0.32 -1.1
1,758,248 + RR42_RS28540 0.32 -0.3
1,758,248 + RR42_RS28540 0.32 -0.0
1,758,248 + RR42_RS28540 0.32 -0.1
1,758,249 - RR42_RS28540 0.32 +0.0
1,758,249 - RR42_RS28540 0.32 +2.7
1,758,249 - RR42_RS28540 0.32 +0.5
1,758,252 + RR42_RS28540 0.32 +3.7
1,758,253 - RR42_RS28540 0.33 -1.4
1,758,348 + RR42_RS28540 0.40 +2.4
1,758,349 - RR42_RS28540 0.40 -1.3
1,758,349 - RR42_RS28540 0.40 +0.8
1,758,456 - RR42_RS28540 0.49 +0.6
1,758,456 - RR42_RS28540 0.49 -2.6
1,758,657 + RR42_RS28540 0.65 +0.2
1,758,666 + RR42_RS28540 0.65 +1.2
1,758,667 - RR42_RS28540 0.65 +1.1
1,758,750 + RR42_RS28540 0.72 -2.7
1,758,750 + RR42_RS28540 0.72 +0.4
1,758,828 + RR42_RS28540 0.78 -3.5
1,758,828 + RR42_RS28540 0.78 -3.3
1,758,828 + RR42_RS28540 0.78 -2.6
1,758,828 + RR42_RS28540 0.78 -0.4
1,758,829 - RR42_RS28540 0.78 +1.9
1,758,829 - RR42_RS28540 0.78 +1.4
1,758,831 - RR42_RS28540 0.79 -2.9
1,758,942 + RR42_RS28540 0.87 +0.9
1,758,943 - RR42_RS28540 0.87 +1.2
1,758,954 + RR42_RS28540 0.88 +0.1
1,759,112 + -0.7
1,759,112 + +1.0
1,759,113 - -0.4
1,759,460 + RR42_RS28545 0.26 -0.6
1,759,780 + RR42_RS28545 0.54 -1.3
1,759,780 + RR42_RS28545 0.54 +0.0
1,759,781 - RR42_RS28545 0.54 -4.1
1,759,781 - RR42_RS28545 0.54 -2.7
1,759,781 - RR42_RS28545 0.54 -1.6
1,759,970 - RR42_RS28545 0.70 -2.1
1,760,050 + RR42_RS28545 0.77 -3.4
1,760,051 - RR42_RS28545 0.77 -0.2
1,760,327 + +1.2
1,760,328 - +0.9
1,760,487 - RR42_RS28550 0.21 -1.9
1,760,793 - RR42_RS28550 0.61 -2.1
1,760,992 + RR42_RS28550 0.86 +0.5
1,761,121 + +0.8

Or see this region's nucleotide sequence