Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS27760 and RR42_RS27765 are separated by 243 nucleotides RR42_RS27765 and RR42_RS27770 are separated by 114 nucleotides RR42_RS27770 and RR42_RS27775 are separated by 29 nucleotides
RR42_RS27760: RR42_RS27760 - endonuclease, at 1,589,713 to 1,591,758
_RS27760
RR42_RS27765: RR42_RS27765 - haloacid dehalogenase, at 1,592,002 to 1,592,625
_RS27765
RR42_RS27770: RR42_RS27770 - CDP-diacylglycerol--serine O-phosphatidyltransferase, at 1,592,740 to 1,593,372
_RS27770
RR42_RS27775: RR42_RS27775 - phospholipase, at 1,593,402 to 1,595,606
_RS27775
Position (kb)
1592
1593 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1591.110 kb on - strand, within RR42_RS27760 at 1591.298 kb on + strand, within RR42_RS27760 at 1591.298 kb on + strand, within RR42_RS27760 at 1591.299 kb on - strand, within RR42_RS27760 at 1591.747 kb on - strand at 1591.899 kb on + strand at 1591.899 kb on + strand at 1591.900 kb on - strand at 1591.938 kb on + strand at 1591.938 kb on + strand at 1591.938 kb on + strand at 1591.938 kb on + strand at 1591.939 kb on - strand at 1591.998 kb on + strand at 1591.998 kb on + strand at 1591.998 kb on + strand at 1591.999 kb on - strand at 1591.999 kb on - strand at 1592.018 kb on + strand at 1592.019 kb on - strand at 1592.019 kb on - strand at 1592.062 kb on + strand at 1592.063 kb on - strand at 1592.140 kb on - strand, within RR42_RS27765 at 1592.230 kb on + strand, within RR42_RS27765 at 1592.231 kb on - strand, within RR42_RS27765 at 1592.347 kb on + strand, within RR42_RS27765 at 1592.348 kb on - strand, within RR42_RS27765 at 1592.444 kb on - strand, within RR42_RS27765 at 1592.860 kb on + strand, within RR42_RS27770 at 1592.861 kb on - strand, within RR42_RS27770 at 1592.861 kb on - strand, within RR42_RS27770 at 1593.263 kb on - strand, within RR42_RS27770 at 1593.559 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 1,591,110 - RR42_RS27760 0.68 +1.1 1,591,298 + RR42_RS27760 0.77 -2.4 1,591,298 + RR42_RS27760 0.77 +0.7 1,591,299 - RR42_RS27760 0.78 -2.8 1,591,747 - +1.8 1,591,899 + -2.1 1,591,899 + -3.7 1,591,900 - +1.3 1,591,938 + +0.4 1,591,938 + +0.3 1,591,938 + -0.3 1,591,938 + -2.4 1,591,939 - -1.1 1,591,998 + -2.0 1,591,998 + -0.1 1,591,998 + -2.2 1,591,999 - -0.7 1,591,999 - +0.9 1,592,018 + +0.7 1,592,019 - -3.1 1,592,019 - -0.8 1,592,062 + -0.4 1,592,063 - +2.3 1,592,140 - RR42_RS27765 0.22 -0.1 1,592,230 + RR42_RS27765 0.37 +1.6 1,592,231 - RR42_RS27765 0.37 -0.1 1,592,347 + RR42_RS27765 0.55 +0.3 1,592,348 - RR42_RS27765 0.55 +1.7 1,592,444 - RR42_RS27765 0.71 +0.7 1,592,860 + RR42_RS27770 0.19 +0.4 1,592,861 - RR42_RS27770 0.19 -0.2 1,592,861 - RR42_RS27770 0.19 +1.0 1,593,263 - RR42_RS27770 0.83 -0.1 1,593,559 + -3.4
Or see this region's nucleotide sequence