Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS27765

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS27760 and RR42_RS27765 are separated by 243 nucleotidesRR42_RS27765 and RR42_RS27770 are separated by 114 nucleotidesRR42_RS27770 and RR42_RS27775 are separated by 29 nucleotides RR42_RS27760: RR42_RS27760 - endonuclease, at 1,589,713 to 1,591,758 _RS27760 RR42_RS27765: RR42_RS27765 - haloacid dehalogenase, at 1,592,002 to 1,592,625 _RS27765 RR42_RS27770: RR42_RS27770 - CDP-diacylglycerol--serine O-phosphatidyltransferase, at 1,592,740 to 1,593,372 _RS27770 RR42_RS27775: RR42_RS27775 - phospholipase, at 1,593,402 to 1,595,606 _RS27775 Position (kb) 1592 1593Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1591.110 kb on - strand, within RR42_RS27760at 1591.298 kb on + strand, within RR42_RS27760at 1591.298 kb on + strand, within RR42_RS27760at 1591.299 kb on - strand, within RR42_RS27760at 1591.747 kb on - strandat 1591.899 kb on + strandat 1591.899 kb on + strandat 1591.900 kb on - strandat 1591.938 kb on + strandat 1591.938 kb on + strandat 1591.938 kb on + strandat 1591.938 kb on + strandat 1591.939 kb on - strandat 1591.998 kb on + strandat 1591.998 kb on + strandat 1591.998 kb on + strandat 1591.999 kb on - strandat 1591.999 kb on - strandat 1592.018 kb on + strandat 1592.019 kb on - strandat 1592.019 kb on - strandat 1592.062 kb on + strandat 1592.063 kb on - strandat 1592.140 kb on - strand, within RR42_RS27765at 1592.230 kb on + strand, within RR42_RS27765at 1592.231 kb on - strand, within RR42_RS27765at 1592.347 kb on + strand, within RR42_RS27765at 1592.348 kb on - strand, within RR42_RS27765at 1592.444 kb on - strand, within RR42_RS27765at 1592.860 kb on + strand, within RR42_RS27770at 1592.861 kb on - strand, within RR42_RS27770at 1592.861 kb on - strand, within RR42_RS27770at 1593.263 kb on - strand, within RR42_RS27770at 1593.559 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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1,591,110 - RR42_RS27760 0.68 +1.1
1,591,298 + RR42_RS27760 0.77 -2.4
1,591,298 + RR42_RS27760 0.77 +0.7
1,591,299 - RR42_RS27760 0.78 -2.8
1,591,747 - +1.8
1,591,899 + -2.1
1,591,899 + -3.7
1,591,900 - +1.3
1,591,938 + +0.4
1,591,938 + +0.3
1,591,938 + -0.3
1,591,938 + -2.4
1,591,939 - -1.1
1,591,998 + -2.0
1,591,998 + -0.1
1,591,998 + -2.2
1,591,999 - -0.7
1,591,999 - +0.9
1,592,018 + +0.7
1,592,019 - -3.1
1,592,019 - -0.8
1,592,062 + -0.4
1,592,063 - +2.3
1,592,140 - RR42_RS27765 0.22 -0.1
1,592,230 + RR42_RS27765 0.37 +1.6
1,592,231 - RR42_RS27765 0.37 -0.1
1,592,347 + RR42_RS27765 0.55 +0.3
1,592,348 - RR42_RS27765 0.55 +1.7
1,592,444 - RR42_RS27765 0.71 +0.7
1,592,860 + RR42_RS27770 0.19 +0.4
1,592,861 - RR42_RS27770 0.19 -0.2
1,592,861 - RR42_RS27770 0.19 +1.0
1,593,263 - RR42_RS27770 0.83 -0.1
1,593,559 + -3.4

Or see this region's nucleotide sequence