Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS27740

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
1,585,839	+				+0.4
1,585,839	+				-3.8
1,585,840	-				-0.3
1,586,064	+		RR42_RS27735	0.22	-2.8
1,586,064	+		RR42_RS27735	0.22	-1.3
1,586,065	-		RR42_RS27735	0.22	+0.3
1,586,065	-		RR42_RS27735	0.22	-1.6
1,586,172	-		RR42_RS27735	0.37	-1.9
1,586,224	+		RR42_RS27735	0.44	-2.3
1,586,224	+		RR42_RS27735	0.44	+0.1
1,586,225	-		RR42_RS27735	0.44	-1.4
1,586,226	+		RR42_RS27735	0.44	-2.2
1,586,226	+		RR42_RS27735	0.44	-2.0
1,586,226	+		RR42_RS27735	0.44	-2.2
1,586,226	+		RR42_RS27735	0.44	-0.6
1,586,226	+		RR42_RS27735	0.44	-2.8
1,586,227	-		RR42_RS27735	0.44	-2.0
1,586,227	-		RR42_RS27735	0.44	+1.5
1,586,336	+		RR42_RS27735	0.59	-0.2
1,586,336	+		RR42_RS27735	0.59	-3.7
1,586,337	-		RR42_RS27735	0.59	+0.4
1,586,337	-		RR42_RS27735	0.59	-3.0
1,586,538	-		RR42_RS27735	0.87	-5.2
1,586,604	-				-3.6
1,586,604	-				-1.1
1,586,822	+				-2.2
1,586,823	-				+1.1
1,586,827	+				-0.3
1,586,827	+				-0.4
1,586,828	-				+1.8
1,586,828	-				+0.3
1,586,828	-				+1.0
1,586,828	-				-3.1
1,586,836	+				+2.3
1,586,836	+				+0.4
1,586,837	-				-2.8
1,586,839	+				-0.6
1,586,839	+				+0.5
1,586,840	-				-1.2
1,587,426	+		RR42_RS27740	0.44	-0.9
1,587,426	+		RR42_RS27740	0.44	+1.0
1,587,427	-		RR42_RS27740	0.44	+1.8
1,587,560	+		RR42_RS27740	0.53	+2.8
1,587,560	+		RR42_RS27740	0.53	-0.2
1,587,848	+		RR42_RS27740	0.72	+1.3
1,587,849	-		RR42_RS27740	0.72	+0.9
1,587,904	+		RR42_RS27740	0.76	-4.0
1,587,904	+		RR42_RS27740	0.76	+1.8
1,587,904	+		RR42_RS27740	0.76	-1.4
1,587,905	-		RR42_RS27740	0.76	-0.4
1,587,907	+		RR42_RS27740	0.76	+1.6
1,587,907	+		RR42_RS27740	0.76	+0.6
1,587,908	-		RR42_RS27740	0.76	+0.5
1,587,960	+		RR42_RS27740	0.79	-2.9
1,587,961	-		RR42_RS27740	0.80	+1.4
1,588,087	+		RR42_RS27740	0.88	-0.1
1,588,114	+		RR42_RS27740	0.90	-0.7
1,588,183	+				+1.3
1,588,183	+				+1.2
1,588,183	+				-1.5
1,588,184	-				-0.2
1,588,184	-				+1.1
1,588,203	+				+0.5
1,588,204	-				+0.1
1,588,245	-				-5.1
1,588,245	-				+0.0
1,588,264	+				-1.9
1,588,265	-				+0.8
1,588,265	-				-0.7
1,588,289	+				+2.4
1,588,290	-				-1.7
1,588,290	-				-1.8
1,588,290	-				-1.7
1,588,424	+		RR42_RS27745	0.60	-2.8
1,588,425	-		RR42_RS27745	0.60	-1.6
1,588,425	-		RR42_RS27745	0.60	+0.2
1,588,460	+		RR42_RS27745	0.75	-1.4
1,588,460	+		RR42_RS27745	0.75	+1.7
1,588,461	-		RR42_RS27745	0.76	+1.0
1,588,561	+				-1.0
1,588,561	+				-0.8
1,588,562	-				-1.2
1,588,562	-				-3.7
1,588,892	+		RR42_RS27750	0.54	-3.5
1,588,892	+		RR42_RS27750	0.54	-2.3
1,588,892	+		RR42_RS27750	0.54	-0.3
1,588,892	+		RR42_RS27750	0.54	-1.7
1,588,893	-		RR42_RS27750	0.54	+0.3
1,588,893	-		RR42_RS27750	0.54	-3.4
1,588,919	+		RR42_RS27750	0.59	-2.1
1,588,919	+		RR42_RS27750	0.59	-0.3
1,588,962	+		RR42_RS27750	0.69	+0.3
1,588,962	+		RR42_RS27750	0.69	-0.8
1,588,963	-		RR42_RS27750	0.69	+0.7
1,588,979	+		RR42_RS27750	0.72	-2.8
1,588,997	+		RR42_RS27750	0.76	-0.1
1,588,998	-		RR42_RS27750	0.76	-2.3
1,589,052	+		RR42_RS27750	0.88	+0.8
1,589,053	-		RR42_RS27750	0.88	-0.8
1,589,053	-		RR42_RS27750	0.88	+0.9
1,589,066	+				+0.3
1,589,067	-				+0.2
1,589,106	-				-0.5