Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS27705 and RR42_RS27710 are separated by 273 nucleotides RR42_RS27710 and RR42_RS27715 are separated by 203 nucleotides RR42_RS27715 and RR42_RS27720 are separated by 17 nucleotides
RR42_RS27705: RR42_RS27705 - NAD-dependent deacetylase, at 1,579,660 to 1,580,520
_RS27705
RR42_RS27710: RR42_RS27710 - LysR family transcriptional regulator, at 1,580,794 to 1,581,705
_RS27710
RR42_RS27715: RR42_RS27715 - hypothetical protein, at 1,581,909 to 1,582,556
_RS27715
RR42_RS27720: RR42_RS27720 - MFS transporter, at 1,582,574 to 1,583,896
_RS27720
Position (kb)
1580
1581
1582 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 1579.892 kb on + strand, within RR42_RS27705 at 1579.952 kb on - strand, within RR42_RS27705 at 1580.588 kb on + strand at 1580.625 kb on + strand at 1580.625 kb on + strand at 1580.677 kb on + strand at 1580.678 kb on - strand at 1580.678 kb on - strand at 1580.837 kb on + strand at 1580.838 kb on - strand at 1581.140 kb on - strand, within RR42_RS27710 at 1581.407 kb on - strand, within RR42_RS27710 at 1581.590 kb on + strand, within RR42_RS27710 at 1581.832 kb on + strand at 1582.041 kb on + strand, within RR42_RS27715 at 1582.068 kb on + strand, within RR42_RS27715 at 1582.081 kb on - strand, within RR42_RS27715 at 1582.120 kb on - strand, within RR42_RS27715 at 1582.120 kb on - strand, within RR42_RS27715 at 1582.345 kb on - strand, within RR42_RS27715 at 1582.369 kb on + strand, within RR42_RS27715 at 1582.370 kb on - strand, within RR42_RS27715 at 1582.370 kb on - strand, within RR42_RS27715 at 1582.515 kb on + strand at 1582.685 kb on + strand at 1582.701 kb on - strand at 1582.701 kb on - strand at 1582.701 kb on - strand at 1582.703 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 1,579,892 + RR42_RS27705 0.27 +0.2 1,579,952 - RR42_RS27705 0.34 +1.6 1,580,588 + -0.2 1,580,625 + +1.8 1,580,625 + -1.2 1,580,677 + -3.3 1,580,678 - +0.8 1,580,678 - -0.9 1,580,837 + +0.2 1,580,838 - +1.0 1,581,140 - RR42_RS27710 0.38 -3.1 1,581,407 - RR42_RS27710 0.67 -0.8 1,581,590 + RR42_RS27710 0.87 -0.5 1,581,832 + +1.9 1,582,041 + RR42_RS27715 0.20 +2.1 1,582,068 + RR42_RS27715 0.25 -3.9 1,582,081 - RR42_RS27715 0.27 -1.9 1,582,120 - RR42_RS27715 0.33 +0.4 1,582,120 - RR42_RS27715 0.33 -0.2 1,582,345 - RR42_RS27715 0.67 -1.2 1,582,369 + RR42_RS27715 0.71 +0.4 1,582,370 - RR42_RS27715 0.71 +1.7 1,582,370 - RR42_RS27715 0.71 +1.1 1,582,515 + +0.3 1,582,685 + +2.8 1,582,701 - -1.3 1,582,701 - -0.1 1,582,701 - -1.5 1,582,703 - -0.3
Or see this region's nucleotide sequence