Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS27655 and RR42_RS27660 are separated by 121 nucleotides RR42_RS27660 and RR42_RS27665 are separated by 171 nucleotides RR42_RS27665 and RR42_RS27670 are separated by 33 nucleotides
RR42_RS27655: RR42_RS27655 - hypothetical protein, at 1,567,477 to 1,568,295
_RS27655
RR42_RS27660: RR42_RS27660 - transcriptional regulator, at 1,568,417 to 1,569,085
_RS27660
RR42_RS27665: RR42_RS27665 - endoribonuclease L-PSP, at 1,569,257 to 1,569,721
_RS27665
RR42_RS27670: RR42_RS27670 - LysR family transcriptional regulator, at 1,569,755 to 1,570,711
_RS27670
Position (kb) 1568
1569
1570 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 1567.478 kb on + strand at 1567.652 kb on + strand, within RR42_RS27655 at 1568.072 kb on + strand, within RR42_RS27655 at 1568.073 kb on - strand, within RR42_RS27655 at 1568.073 kb on - strand, within RR42_RS27655 at 1568.142 kb on - strand, within RR42_RS27655 at 1568.315 kb on + strand at 1568.368 kb on - strand at 1568.368 kb on - strand at 1568.418 kb on + strand at 1568.715 kb on + strand, within RR42_RS27660 at 1569.096 kb on + strand at 1569.239 kb on + strand at 1569.239 kb on + strand at 1569.239 kb on + strand at 1569.320 kb on + strand, within RR42_RS27665 at 1569.321 kb on - strand, within RR42_RS27665 at 1569.341 kb on + strand, within RR42_RS27665 at 1569.342 kb on - strand, within RR42_RS27665 at 1569.894 kb on + strand, within RR42_RS27670 at 1569.894 kb on + strand, within RR42_RS27670 at 1569.895 kb on - strand, within RR42_RS27670 at 1569.923 kb on - strand, within RR42_RS27670 at 1570.030 kb on - strand, within RR42_RS27670
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 1,567,478 + -2.9 1,567,652 + RR42_RS27655 0.21 +0.5 1,568,072 + RR42_RS27655 0.73 +0.4 1,568,073 - RR42_RS27655 0.73 +0.2 1,568,073 - RR42_RS27655 0.73 +1.4 1,568,142 - RR42_RS27655 0.81 -0.0 1,568,315 + +0.2 1,568,368 - -2.2 1,568,368 - +0.2 1,568,418 + +0.9 1,568,715 + RR42_RS27660 0.45 +0.8 1,569,096 + +0.5 1,569,239 + +0.9 1,569,239 + +1.4 1,569,239 + +0.9 1,569,320 + RR42_RS27665 0.14 -3.1 1,569,321 - RR42_RS27665 0.14 -0.3 1,569,341 + RR42_RS27665 0.18 -2.9 1,569,342 - RR42_RS27665 0.18 +1.1 1,569,894 + RR42_RS27670 0.15 -2.6 1,569,894 + RR42_RS27670 0.15 -2.8 1,569,895 - RR42_RS27670 0.15 +0.9 1,569,923 - RR42_RS27670 0.18 +0.8 1,570,030 - RR42_RS27670 0.29 +0.1
Or see this region's nucleotide sequence