Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS27070 and RR42_RS27075 are separated by 483 nucleotides RR42_RS27075 and RR42_RS27080 are separated by 21 nucleotides RR42_RS27080 and RR42_RS27085 are separated by 248 nucleotides
RR42_RS27070: RR42_RS27070 - membrane protein, at 1,426,021 to 1,426,725
_RS27070
RR42_RS27075: RR42_RS27075 - MFS transporter, at 1,427,209 to 1,428,441
_RS27075
RR42_RS27080: RR42_RS27080 - hypothetical protein, at 1,428,463 to 1,428,747
_RS27080
RR42_RS27085: RR42_RS27085 - hypothetical protein, at 1,428,996 to 1,429,961
_RS27085
Position (kb)
1427
1428
1429 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1426.268 kb on - strand, within RR42_RS27070 at 1426.284 kb on - strand, within RR42_RS27070 at 1426.459 kb on - strand, within RR42_RS27070 at 1426.834 kb on - strand at 1426.834 kb on - strand at 1426.951 kb on - strand at 1427.004 kb on - strand at 1427.004 kb on - strand at 1427.085 kb on + strand at 1427.085 kb on + strand at 1427.086 kb on - strand at 1427.086 kb on - strand at 1427.122 kb on - strand at 1427.207 kb on - strand at 1427.391 kb on - strand, within RR42_RS27075 at 1427.691 kb on - strand, within RR42_RS27075 at 1427.693 kb on + strand, within RR42_RS27075 at 1427.693 kb on + strand, within RR42_RS27075 at 1427.694 kb on - strand, within RR42_RS27075 at 1427.694 kb on - strand at 1427.694 kb on - strand, within RR42_RS27075 at 1427.766 kb on + strand, within RR42_RS27075 at 1427.766 kb on + strand, within RR42_RS27075 at 1427.945 kb on + strand, within RR42_RS27075 at 1427.945 kb on + strand, within RR42_RS27075 at 1427.946 kb on - strand, within RR42_RS27075 at 1428.335 kb on + strand at 1428.558 kb on + strand, within RR42_RS27080 at 1428.712 kb on + strand, within RR42_RS27080 at 1428.757 kb on + strand at 1428.757 kb on + strand at 1428.835 kb on + strand at 1428.836 kb on - strand at 1429.081 kb on - strand at 1429.287 kb on + strand, within RR42_RS27085 at 1429.338 kb on + strand, within RR42_RS27085 at 1429.338 kb on + strand, within RR42_RS27085 at 1429.338 kb on + strand, within RR42_RS27085 at 1429.339 kb on - strand, within RR42_RS27085
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 1,426,268 - RR42_RS27070 0.35 +1.3 1,426,284 - RR42_RS27070 0.37 -2.6 1,426,459 - RR42_RS27070 0.62 -0.6 1,426,834 - +1.7 1,426,834 - +1.4 1,426,951 - +2.1 1,427,004 - -0.1 1,427,004 - -2.2 1,427,085 + -1.4 1,427,085 + -3.1 1,427,086 - +0.0 1,427,086 - -3.2 1,427,122 - +1.7 1,427,207 - -2.6 1,427,391 - RR42_RS27075 0.15 -0.8 1,427,691 - RR42_RS27075 0.39 +1.6 1,427,693 + RR42_RS27075 0.39 -0.5 1,427,693 + RR42_RS27075 0.39 +1.2 1,427,694 - RR42_RS27075 0.39 -2.5 1,427,694 - +1.8 1,427,694 - RR42_RS27075 0.39 -0.5 1,427,766 + RR42_RS27075 0.45 -0.4 1,427,766 + RR42_RS27075 0.45 -1.5 1,427,945 + RR42_RS27075 0.60 -1.8 1,427,945 + RR42_RS27075 0.60 +1.2 1,427,946 - RR42_RS27075 0.60 -3.2 1,428,335 + +0.7 1,428,558 + RR42_RS27080 0.33 +1.8 1,428,712 + RR42_RS27080 0.87 -0.3 1,428,757 + -1.0 1,428,757 + +1.4 1,428,835 + -1.6 1,428,836 - +1.7 1,429,081 - -0.3 1,429,287 + RR42_RS27085 0.30 +0.8 1,429,338 + RR42_RS27085 0.35 +0.8 1,429,338 + RR42_RS27085 0.35 -0.2 1,429,338 + RR42_RS27085 0.35 +0.2 1,429,339 - RR42_RS27085 0.36 +0.2
Or see this region's nucleotide sequence