Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS25455

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS25450 and RR42_RS25455 are separated by 249 nucleotidesRR42_RS25455 and RR42_RS25460 are separated by 128 nucleotidesRR42_RS25460 and RR42_RS25465 are separated by 5 nucleotides RR42_RS25450: RR42_RS25450 - cobalamin biosynthesis protein, at 1,055,952 to 1,057,220 _RS25450 RR42_RS25455: RR42_RS25455 - acetyl-CoA acetyltransferase, at 1,057,470 to 1,058,654 _RS25455 RR42_RS25460: RR42_RS25460 - IclR family transcriptional regulator, at 1,058,783 to 1,059,631 _RS25460 RR42_RS25465: RR42_RS25465 - long-chain fatty acid--CoA ligase, at 1,059,637 to 1,061,289 _RS25465 Position (kb) 1057 1058 1059Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1056.580 kb on + strand, within RR42_RS25450at 1056.581 kb on - strand, within RR42_RS25450at 1056.600 kb on + strand, within RR42_RS25450at 1056.601 kb on - strand, within RR42_RS25450at 1056.680 kb on + strand, within RR42_RS25450at 1056.714 kb on + strand, within RR42_RS25450at 1056.714 kb on + strand, within RR42_RS25450at 1056.715 kb on - strand, within RR42_RS25450at 1056.905 kb on - strand, within RR42_RS25450at 1057.238 kb on + strandat 1057.238 kb on + strandat 1057.242 kb on + strandat 1057.243 kb on - strandat 1057.422 kb on + strandat 1057.423 kb on - strandat 1057.974 kb on + strand, within RR42_RS25455at 1058.589 kb on + strandat 1058.784 kb on + strandat 1058.785 kb on - strandat 1058.880 kb on - strand, within RR42_RS25460at 1059.119 kb on + strand, within RR42_RS25460at 1059.184 kb on + strand, within RR42_RS25460at 1059.217 kb on + strand, within RR42_RS25460at 1059.217 kb on + strand, within RR42_RS25460at 1059.219 kb on + strand, within RR42_RS25460at 1059.220 kb on - strand, within RR42_RS25460at 1059.220 kb on - strand, within RR42_RS25460at 1059.220 kb on - strand, within RR42_RS25460at 1059.418 kb on + strand, within RR42_RS25460at 1059.418 kb on + strand, within RR42_RS25460at 1059.419 kb on - strand, within RR42_RS25460at 1059.419 kb on - strand, within RR42_RS25460at 1059.420 kb on + strand, within RR42_RS25460at 1059.421 kb on - strand, within RR42_RS25460

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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1,056,580 + RR42_RS25450 0.49 -1.6
1,056,581 - RR42_RS25450 0.50 -0.2
1,056,600 + RR42_RS25450 0.51 +1.8
1,056,601 - RR42_RS25450 0.51 +1.4
1,056,680 + RR42_RS25450 0.57 +1.4
1,056,714 + RR42_RS25450 0.60 +1.6
1,056,714 + RR42_RS25450 0.60 -3.4
1,056,715 - RR42_RS25450 0.60 +1.4
1,056,905 - RR42_RS25450 0.75 -4.3
1,057,238 + -0.4
1,057,238 + +2.0
1,057,242 + +1.1
1,057,243 - +0.4
1,057,422 + -0.4
1,057,423 - +2.0
1,057,974 + RR42_RS25455 0.43 -3.1
1,058,589 + -2.1
1,058,784 + -2.1
1,058,785 - +0.4
1,058,880 - RR42_RS25460 0.11 +0.2
1,059,119 + RR42_RS25460 0.40 -2.6
1,059,184 + RR42_RS25460 0.47 -0.1
1,059,217 + RR42_RS25460 0.51 -0.9
1,059,217 + RR42_RS25460 0.51 -1.4
1,059,219 + RR42_RS25460 0.51 +0.4
1,059,220 - RR42_RS25460 0.51 +0.7
1,059,220 - RR42_RS25460 0.51 -0.2
1,059,220 - RR42_RS25460 0.51 +1.1
1,059,418 + RR42_RS25460 0.75 -1.0
1,059,418 + RR42_RS25460 0.75 +1.4
1,059,419 - RR42_RS25460 0.75 +0.2
1,059,419 - RR42_RS25460 0.75 -0.6
1,059,420 + RR42_RS25460 0.75 +1.5
1,059,421 - RR42_RS25460 0.75 -0.3

Or see this region's nucleotide sequence